PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 285aa MW: 32102.5 Da PI: 9.8788 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.9 | 1.8e-32 | 205 | 263 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ HL.SW.v1.0.G028610.1 205 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 263 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.2E-33 | 191 | 263 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.53E-28 | 198 | 264 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.057 | 200 | 265 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-38 | 205 | 264 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 206 | 263 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MHVCGSVQPL SSPSTILFIK TFFVLKLPYI YIYKLPYSTI FISSIFSTTL RLLIRLYQKS 60 YTPAMEGQHP PPTTLLPPPP TSLPSLPPQI SSPNFLFSPP SLPSSTSSST LLMNNSPNPN 120 QEIDWISLFS GQTGGITADE MTMNNSISCR SKTVLQNNSN NNNKEADGDH DQEDNQSNKR 180 RAPGKTRKAA RPRFAFQTRS ADDILDDGYR WRKYGQKAVK NSAYPRSYYR CTHHTCNVKK 240 QVQRLSKDTS IVVTTYEGIH NHPCEKLMET LTPLLRQMQF LSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-24 | 193 | 262 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021808064.1 | 3e-77 | probable WRKY transcription factor 24 | ||||
TrEMBL | A0A2P5D414 | 1e-80 | A0A2P5D414_PARAD; WRKY domain containing protein | ||||
TrEMBL | A0A2P5F037 | 1e-80 | A0A2P5F037_TREOI; WRKY domain containing protein | ||||
STRING | XP_010112967.1 | 6e-79 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 4e-57 | WRKY DNA-binding protein 24 |