PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028610.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 285aa    MW: 32102.5 Da    PI: 9.8788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028610.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.91.8e-32205263159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  HL.SW.v1.0.G028610.1 205 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 263
                           59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-33191263IPR003657WRKY domain
SuperFamilySSF1182903.53E-28198264IPR003657WRKY domain
PROSITE profilePS5081129.057200265IPR003657WRKY domain
SMARTSM007745.6E-38205264IPR003657WRKY domain
PfamPF031061.4E-25206263IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MHVCGSVQPL SSPSTILFIK TFFVLKLPYI YIYKLPYSTI FISSIFSTTL RLLIRLYQKS  60
YTPAMEGQHP PPTTLLPPPP TSLPSLPPQI SSPNFLFSPP SLPSSTSSST LLMNNSPNPN  120
QEIDWISLFS GQTGGITADE MTMNNSISCR SKTVLQNNSN NNNKEADGDH DQEDNQSNKR  180
RAPGKTRKAA RPRFAFQTRS ADDILDDGYR WRKYGQKAVK NSAYPRSYYR CTHHTCNVKK  240
QVQRLSKDTS IVVTTYEGIH NHPCEKLMET LTPLLRQMQF LSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-24193262271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021808064.13e-77probable WRKY transcription factor 24
TrEMBLA0A2P5D4141e-80A0A2P5D414_PARAD; WRKY domain containing protein
TrEMBLA0A2P5F0371e-80A0A2P5F037_TREOI; WRKY domain containing protein
STRINGXP_010112967.16e-79(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-57WRKY DNA-binding protein 24