PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028544.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family SBP
Protein Properties Length: 363aa    MW: 38657 Da    PI: 9.3026
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028544.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.51.9e-4385160176
                           --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                   SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                           +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  HL.SW.v1.0.G028544.1  85 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVVVNGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 160
                           6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.1E-3679147IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.60783160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-4184164IPR004333Transcription factor, SBP-box
PfamPF031106.9E-3386159IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGHCQRSLME MGSSSMTESG GSSSSSPPNS STESLNGLKF GQKIYFEDVG IGATPKSGAG  60
SSSSSGATPP KKVRGSPVQS GQPPRCQVEG CKVDLSDAKA YYSRHKVCGM HSKSPKVVVN  120
GLEQRFCQQC SRFHQLPEFD QGKRSCRRRL AGHNERRRKP PPGSLLSTQN SGRVGSFLMD  180
FSAYPRLGGR DAWPTARISD RMPGNQSAIP TGKYTSACGT SIPASHGIPP PPGECISVVA  240
DSSCALSLLS NQPWGSRNRS SPGLGLHSLM NTQGTPVAEP TTASHGGTVN HFSNNSWGIK  300
GDMAGSSSHQ ILPDLGLGQF SQPLTGQYSG ELELSQQGRR PYMESEHSRD YDSSSQHMHW  360
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-31861591184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102560.10.0squamosa promoter-binding-like protein 14
TrEMBLW9RJ150.0W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.19e-63squamosa promoter binding protein-like 15