PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G028354.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 41374.4 Da PI: 6.5151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.8 | 1.7e-12 | 183 | 228 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI +L HL.SW.v1.0.G028354.1 183 NHVEAERQRREKLNNRFYALRAVVPNV-----SRMDKASLLSDAVSYIDEL 228 799***********************6.....4***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.2E-25 | 1 | 83 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.837 | 179 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-17 | 179 | 244 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.01E-13 | 182 | 232 | No hit | No description |
Pfam | PF00010 | 5.1E-10 | 183 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.8E-16 | 183 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-15 | 185 | 234 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MSLSRSFFAG EGVPGKALSS GSLVWLTGGH ELQFYNCDRA NDAHLHGIET LVCIPTSCGV 60 LELGSSEIIR ENWGLVQQAK SLFGTDPNPI QFLRRNLSFA DIGITAGVRE EDETNNHSTK 120 ETTTLALMKT ARKEVLHGPN SIYPESDHSD SISDCPLVVA DVNKRLPKKR GRKPGLGRDT 180 PLNHVEAERQ RREKLNNRFY ALRAVVPNVS RMDKASLLSD AVSYIDELKT KINDLESQLV 240 QRDQTNNNHN KRVKIEMADN SLDNQSTTTS VDQTRPNNSN NSSGTPSADE DGGVGIELDV 300 KIVGTDAMIR VQSENENYPA ARLMGALREL EFQIHHASVS TINDLMLQDV VVKVADQRMR 360 NDHHALKAAI LARF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_B | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_E | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_F | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_G | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_I | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_M | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
5gnj_N | 1e-28 | 176 | 258 | 1 | 79 | Transcription factor MYC2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100678.1 | 1e-168 | transcription factor MYC2 | ||||
TrEMBL | A0A2P5DQE1 | 0.0 | A0A2P5DQE1_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010100678.1 | 1e-167 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-57 | bHLH family protein |