PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028163.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 481aa MW: 53238.4 Da PI: 6.3207

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028163.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	110	171	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k+l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+sss HL.SW.v1.0.G028163.1 110 PDKILPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGRRRNKHSSS 171 68999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	98	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-31	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.649	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MSLSQSQLRD PAIKLFGRNI PLPDSNSSSE TSHSDSPHSQ LMDECREEAT KAEVEDTEER 60 CCEHDSFSDS NGKGNSYQNH VQENEVTCNP EENRGDESDR STKEKILKRP DKILPCPRCN 120 SLETKFCYFN NYNVNQPRHF CKNCQRYWTA GGTIRNVPVG AGRRRNKHSS SQSHQETTND 180 SAVVVTQVDC HNVTSNQSPS FNRLPASARL DNGMGEGLKF SSDAPLCESM ETKLIIKDQK 240 RSDIESATFR DSEELSLSSN SSNAPSSHDS SCLRIEDNSA DHTHPMQCYP VPQWAYPWNP 300 GWSVMMVGQN GSNPNPSNVG ALPMVSVPGF SAPNTPFPFV PASYWGYMPS WDAQNWTQPF 360 RYAGSRSPSS STVNTSCSSN SSPTLGKHSR DTNMQAEEKT EQCLWVPKTL RIDDPEEAAK 420 SSIWSTLGIK PDKNTPIMRG GIFKAFQPKS NANSHSSDAD QVLQSNPAAL SRSRSFKEST 480 *

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MSLSQSQLRD PAIKLFGRNI PLPDSNSSSE TSHSDSPHSQ LMDECREEAT KAEVEDTEER  60
CCEHDSFSDS NGKGNSYQNH VQENEVTCNP EENRGDESDR STKEKILKRP DKILPCPRCN  120
SLETKFCYFN NYNVNQPRHF CKNCQRYWTA GGTIRNVPVG AGRRRNKHSS SQSHQETTND  180
SAVVVTQVDC HNVTSNQSPS FNRLPASARL DNGMGEGLKF SSDAPLCESM ETKLIIKDQK  240
RSDIESATFR DSEELSLSSN SSNAPSSHDS SCLRIEDNSA DHTHPMQCYP VPQWAYPWNP  300
GWSVMMVGQN GSNPNPSNVG ALPMVSVPGF SAPNTPFPFV PASYWGYMPS WDAQNWTQPF  360
RYAGSRSPSS STVNTSCSSN SSPTLGKHSR DTNMQAEEKT EQCLWVPKTL RIDDPEEAAK  420
SSIWSTLGIK PDKNTPIMRG GIFKAFQPKS NANSHSSDAD QVLQSNPAAL SRSRSFKEST  480
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024457.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5D0M7	0.0	A0A2P5D0M7_PARAD; Zinc finger, Dof-type
STRING	XP_010086689.1	1e-176	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	8e-71	cycling DOF factor 2