PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028149.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family DBB
Protein Properties Length: 192aa    MW: 20776.8 Da    PI: 4.5106
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028149.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.55.5e-08434535
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHk 35
                           C+ +e+  ++lfC  ++  lC +C ++ Hk
  HL.SW.v1.0.G028149.1  4 LCDVCEKAAAILFCAADEAALCSSCDDKVHK 34
                          7******99*******************995 PP
2zf-B_box23.21.4e-075284234
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                          + ++C+ +e+ ++ ++Ce +++ lC +C +  H
  HL.SW.v1.0.G028149.1 52 DVPRCDICESGPAFFYCEIDGSSLCLQCDMIVH 84
                          5799******99****************99878 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-7147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
CDDcd000216.64E-5345No hitNo description
PfamPF006439.1E-7343IPR000315B-box-type zinc finger
SMARTSM003360.00295193IPR000315B-box-type zinc finger
PROSITE profilePS501198.5325184IPR000315B-box-type zinc finger
CDDcd000211.26E-55484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MRTLCDVCEK AAAILFCAAD EAALCSSCDD KVHKCNKLAS RHVRVGLADP SDVPRCDICE  60
SGPAFFYCEI DGSSLCLQCD MIVHVGGDKS GNLEELRLPP LDSNEVRREQ SQPSRLNQQN  120
HRVSSVAVLD NNNNNNNNNN DDDDDDDDDG GGGGGTKMDN KLIDLNSRPH RIHGQHSTNQ  180
GMDVLSVNPQ V*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030222.12e-86B-box zinc finger protein 19 isoform X2
SwissprotC0SVM57e-58BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A2P5BGQ21e-87A0A2P5BGQ2_PARAD; B-box-type zinc finger
STRINGcassava4.1_016111m3e-80(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-58DBB family protein