PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028142.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | RAV | ||||||||
Protein Properties | Length: 381aa MW: 42864.4 Da PI: 7.1024 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 24.9 | 5.2e-08 | 83 | 122 | 10 | 54 |
AP2 10 kkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 ++g W A+I+ + +r++lg+f ++eAa a++ a+ +l+ HL.SW.v1.0.G028142.1 83 QQNGHWGAQIYA------NhQRIWLGTFKLEKEAAMAYDSAAIRLR 122 34788****999......44**********99**********9986 PP | |||||||
2 | B3 | 93.9 | 1.1e-29 | 199 | 299 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT.........---...........--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke.........esktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 f+k+ltpsdv+k++rlv+pkk+a+++ + e +++++l d s rsW++k++y+++s+++v+t+GW++Fvk+ HL.SW.v1.0.G028142.1 199 FQKELTPSDVGKLNRLVIPKKYATKYlpriseekpE---EkeshndgmvDDMEVVLHDNSMRSWKFKYCYWRSSQSFVFTRGWSRFVKE 284 99**************************99976651...1445666666999************************************* PP HT--TT-EEEEEE-S CS B3 72 ngLkegDfvvFkldg 86 +gLk++D++ F+l++ HL.SW.v1.0.G028142.1 285 KGLKANDTIAFYLSE 299 ************874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.61E-20 | 75 | 133 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-13 | 76 | 132 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.8E-17 | 76 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.529 | 76 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 76 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.3E-31 | 196 | 301 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-28 | 197 | 299 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.07E-26 | 198 | 299 | No hit | No description |
PROSITE profile | PS50863 | 13.606 | 199 | 316 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-27 | 199 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.5E-24 | 199 | 306 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MAMQGYKILL DSIYSHNEIL ARFPFPEGFD MEDDMSSIVL NGGANGIQEA ADSNGSVHSL 60 PPSKRAKTGS KSSSAKYKGT VKQQNGHWGA QIYANHQRIW LGTFKLEKEA AMAYDSAAIR 120 LRCGDSHRNF PWTKATAEEP KFQRHYSTDT LLNMIKDGSY QAKFEDFLRN ICLEHLEKEA 180 CLGLDSVNKG GVLFKQLLFQ KELTPSDVGK LNRLVIPKKY ATKYLPRISE EKPEEKESHN 240 DGMVDDMEVV LHDNSMRSWK FKYCYWRSSQ SFVFTRGWSR FVKEKGLKAN DTIAFYLSEQ 300 RLYENNARAF AMIEVVEDNS GLLIEGAAKH SCLGVNFGKG VHKQAEADKE EDGEVVVEEA 360 SNEIPKAGNS GFRLFGVQII * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 1e-24 | 196 | 303 | 11 | 111 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876741.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1 | ||||
Refseq | XP_023876742.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876743.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876744.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876745.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876746.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876747.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023876749.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Refseq | XP_023896329.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1 | ||||
Refseq | XP_023896331.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1 | ||||
Refseq | XP_023896332.1 | 1e-130 | AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2 | ||||
Swissprot | Q9C6P5 | 2e-97 | RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680 | ||||
TrEMBL | A0A2P5F3D7 | 0.0 | A0A2P5F3D7_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010110369.1 | 1e-121 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5000 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50680.1 | 4e-99 | RAV family protein |