PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028117.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family GATA
Protein Properties Length: 292aa    MW: 31441.7 Da    PI: 7.2487
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028117.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.24.1e-17209245135
                  GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++Cgt++  Tp++Rrgp+g+++LCnaCGl++  +g+
  HL.SW.v1.0.G028117.1 209 CTHCGTSSksTPMMRRGPSGPRSLCNACGLFWSNRGT 245
                           *********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.04975110IPR010399Tify domain
SMARTSM009791.1E-1275110IPR010399Tify domain
PfamPF062001.6E-1378109IPR010399Tify domain
PfamPF062031.0E-15142184IPR010402CCT domain
PROSITE profilePS5101712.6142184IPR010402CCT domain
SuperFamilySSF577163.99E-12202254No hitNo description
PROSITE profilePS5011410.739203254IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-14203256IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.0E-16207250IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.59E-15208259No hitNo description
PfamPF003201.9E-14209245IPR000679Zinc finger, GATA-type
PROSITE patternPS003440209236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MYGHRQSMTI PSQIADDEDA SGVGGGAGSV DNPHLRYEAH ALDDPAGGVA GGGDVVEDIN  60
PDSVYGAGHE MVVHRSDGSS QLTLSFRGQV YVFDAVTPDK VQAVLLLLGG CEISAGAQGV  120
GMQSQNHRAM VDIPVRCSQP HRAASLNRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ  180
FTSKKTDGSY SWGNSQESGQ EDNSLQTSCT HCGTSSKSTP MMRRGPSGPR SLCNACGLFW  240
SNRGTLRELS KKTQDHSPTP VEQGEGEASD SNCETTIRTH SNLVSFCNGD T*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099559.21e-165GATA transcription factor 25
SwissprotQ9LRH65e-91GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A2P5EWB21e-171A0A2P5EWB2_TREOI; GATA transcription factor
STRINGXP_010099559.11e-160(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-92GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]