PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G028056.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

FAR1

Protein Properties

Length: 679aa MW: 78479.5 Da PI: 8.4673

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G028056.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.9	6.6e-13	10	79	23	90
FAR1 23 krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 + +++ +r +vCs+eg+r+++ + ++ ++ +++ +r+gC a+l+++++k ++ w+v +++ +HnH+l+ HL.SW.v1.0.G028056.1 10 DSEDNEFQRVWVCSREGRRKDKWINlENLKKIPKPISRVGCSAHLRLNLDKaNNLWVVRDFQPDHNHDLV 79 33444578999********99885677888***************9*************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-10	10	79	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-31	192	286	IPR018289	MULE transposase domain
PROSITE pattern	PS01007	0	258	282	IPR001207	Transposase, mutator type
PROSITE profile	PS50966	10.484	438	476	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-5	441	472	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-6	451	478	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006313	Biological Process	transposition, DNA-mediated
GO:0003677	Molecular Function	DNA binding
GO:0004803	Molecular Function	transposase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MYSHHDVRKD SEDNEFQRVW VCSREGRRKD KWINLENLKK IPKPISRVGC SAHLRLNLDK 60 ANNLWVVRDF QPDHNHDLVL PSEIQFLISN RKVTTKTGEQ VMSMRRSGIR TCQIMYHLVQ 120 ERGGLDYVPF QKRYLYNWIG GKRKTTDTET DSEGALGYLE CLTIRDDEET RLANLFWCDE 180 TSRHDYQNFG DVLAFDTTYK TNAYNKSLLI LVGVNHHFRT IVFGIALLCD ESAETFIWVL 240 QCFLDAMYQK TPSVVITDGD KGMREAISTV MPNAVHRLCA WHISTNASKA IPNPSFTSAI 300 SHLIQYETRR NWAETFLRGH FVVGSRTTQR SKSTNSYLNQ FLTSKLRLSD FIGQIDVALQ 360 TIRHNEMHDD FRSKHSSPQL PNHALQTYHQ QFATYYTRNM YDKVAAQITD NLSYKAMENV 420 TTIDSRVFSL ERFPTGLVRH TVTLDEISSH LKCTCLLFET DGIPCRHMFA VMKNENMQLI 480 PPTLIKDRWR KDAKTRLDLN VAPHSRVPTD ALQTTRWGSL TSVFTCMAHY ATKHEDTYEE 540 AKKQITTLAS RFHTLCQQRE IGNDNEESRP EGACTHDRIV RDPTVVKTKG YEAKKARAKE 600 NNSIGEQDCT RKQKRCRICN QLGHSRSTYK YKNQPTPNTE DISQPVFDMT QELQANNFGN 660 NVVDPNNWET QFRDNNNA*

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MYSHHDVRKD SEDNEFQRVW VCSREGRRKD KWINLENLKK IPKPISRVGC SAHLRLNLDK  60
ANNLWVVRDF QPDHNHDLVL PSEIQFLISN RKVTTKTGEQ VMSMRRSGIR TCQIMYHLVQ  120
ERGGLDYVPF QKRYLYNWIG GKRKTTDTET DSEGALGYLE CLTIRDDEET RLANLFWCDE  180
TSRHDYQNFG DVLAFDTTYK TNAYNKSLLI LVGVNHHFRT IVFGIALLCD ESAETFIWVL  240
QCFLDAMYQK TPSVVITDGD KGMREAISTV MPNAVHRLCA WHISTNASKA IPNPSFTSAI  300
SHLIQYETRR NWAETFLRGH FVVGSRTTQR SKSTNSYLNQ FLTSKLRLSD FIGQIDVALQ  360
TIRHNEMHDD FRSKHSSPQL PNHALQTYHQ QFATYYTRNM YDKVAAQITD NLSYKAMENV  420
TTIDSRVFSL ERFPTGLVRH TVTLDEISSH LKCTCLLFET DGIPCRHMFA VMKNENMQLI  480
PPTLIKDRWR KDAKTRLDLN VAPHSRVPTD ALQTTRWGSL TSVFTCMAHY ATKHEDTYEE  540
AKKQITTLAS RFHTLCQQRE IGNDNEESRP EGACTHDRIV RDPTVVKTKG YEAKKARAKE  600
NNSIGEQDCT RKQKRCRICN QLGHSRSTYK YKNQPTPNTE DISQPVFDMT QELQANNFGN  660
NVVDPNNWET QFRDNNNA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	9e-74	FAR1-related sequence 5