PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G028032.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 240aa    MW: 25859.2 Da    PI: 9.8333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G028032.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.1e-123582254
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          +++h+e+ErrRR+riN  +++Lr+llP+      ++ +Ka+ L  +v+ +k+L
  HL.SW.v1.0.G028032.1 35 CKSHKEAERRRRQRINAHLSTLRSLLPNI-----TRTDKASLLAGVVHRVKEL 82
                          689*************************6.....6999999999999888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.95E-113185No hitNo description
PROSITE profilePS5088814.8693382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-93582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-123687IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-123789IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-103988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MRLAFERQNW PSINLVNLMD GGDSIVSSAS KSETCKSHKE AERRRRQRIN AHLSTLRSLL  60
PNITRTDKAS LLAGVVHRVK ELREKAADVA RKDGDIWFGA GGGVTGSEPE PWPFPSESDE  120
ASLSYCEGGD SKLVKATVCC EDRLGLNRDM ARAIRSVRAR PVRAEMMTVG GRSKSVVVMQ  180
CGGGGGGGGE EDIRALRRAL KAVVENRASG SGLNQSVSGN KRSRLYGSVN EGDYELLLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107684.11e-112transcription factor bHLH30
TrEMBLA0A2P5E1A31e-111A0A2P5E1A3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107684.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-24bHLH family protein