PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G028007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WOX | ||||||||
Protein Properties | Length: 220aa MW: 24871.7 Da PI: 4.9076 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.7 | 3.2e-21 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p++++++e++++l +++e++V++WFqNrRa+ k+ HL.SW.v1.0.G028007.1 80 RQRWSPTPLQLQILERIFDEgNGTPTKQKIKEITSELtqhgQISETNVYNWFQNRRARSKR 140 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 99.9 | 1.8e-32 | 79 | 142 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq HL.SW.v1.0.G028007.1 79 SRQRWSPTPLQLQILERIFDEGNGTPTKQKIKEITSELTQHGQISETNVYNWFQNRRARSKRKQ 142 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 76 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.289 | 76 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-13 | 78 | 145 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.89E-18 | 79 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.74E-14 | 80 | 142 | No hit | No description |
Pfam | PF00046 | 6.1E-19 | 80 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MENESSKEEV ITGSGLFVKV MTDEQMELLR RQISVYATIC EKLAEMHKAI SAHHDLSGMK 60 LGALHCDPLM AYAGHKITSR QRWSPTPLQL QILERIFDEG NGTPTKQKIK EITSELTQHG 120 QISETNVYNW FQNRRARSKR KQSASAPNNM EPEAETETEF VKDNTKPEDT EFYDNSAPRD 180 HNNDVYFPSP EELISWSANG GVLELQSLPS WGGFNVDEL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00669 | PBM | Transfer from GRMZM2G038252 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024020122.1 | 1e-113 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 2e-76 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A2P5EY59 | 1e-132 | A0A2P5EY59_TREOI; Homeodomain transcription factor | ||||
STRING | XP_010094567.1 | 1e-104 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-61 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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