PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | TCP | ||||||||
Protein Properties | Length: 90aa MW: 9337.63 Da PI: 6.2106 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 61 | 4.8e-19 | 1 | 57 | 24 | 80 |
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80 ++a caa++F+L +eLG+ +d +ti WLl a+p+i ++tg+++++++ +++ ss++ HL.SW.v1.0.G027741.1 1 MPAMCAAQIFQLSRELGHWSDDETIKWLLGHAQPSIVAATGSGTNPSRPVSTTSSVV 57 9*****************************************999997775555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 15.426 | 1 | 39 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.5E-13 | 1 | 55 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MPAMCAAQIF QLSRELGHWS DDETIKWLLG HAQPSIVAAT GSGTNPSRPV STTSSVVPAY 60 APTNMVQPVS PMGGQGLFTM TAPPSCHLD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022143970.1 | 3e-29 | transcription factor TCP11 | ||||
TrEMBL | A0A067JZ18 | 1e-27 | A0A067JZ18_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_029119m | 2e-27 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-18 | TCP family protein |