PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027741.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family TCP
Protein Properties Length: 90aa    MW: 9337.63 Da    PI: 6.2106
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027741.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP614.8e-191572480
                   TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaessss 80
                          ++a caa++F+L +eLG+ +d +ti WLl  a+p+i ++tg+++++++ +++ ss++
  HL.SW.v1.0.G027741.1  1 MPAMCAAQIFQLSRELGHWSDDETIKWLLGHAQPSIVAATGSGTNPSRPVSTTSSVV 57
                          9*****************************************999997775555554 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136915.426139IPR017887Transcription factor TCP subgroup
PfamPF036342.5E-13155IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MPAMCAAQIF QLSRELGHWS DDETIKWLLG HAQPSIVAAT GSGTNPSRPV STTSSVVPAY  60
APTNMVQPVS PMGGQGLFTM TAPPSCHLD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022143970.13e-29transcription factor TCP11
TrEMBLA0A067JZ181e-27A0A067JZ18_JATCU; Uncharacterized protein
STRINGcassava4.1_029119m2e-27(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.12e-18TCP family protein