PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027722.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

TCP

Protein Properties

Length: 438aa MW: 46329.8 Da PI: 8.1676

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027722.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.3	9.2e-37	62	178	2	116
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+++ + s +ss+s+ s++ HL.SW.v1.0.G027722.1 62 PPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTsLNISLRSSGSSMSAPs 150 789******************************************************************99987778888877666664 PP TCP 89 .......kaaksaakskksqksaasalnlakesra 116 + ++ + aa+a+++ + +++ HL.SW.v1.0.G027722.1 151 yfrssyfN-------PNYNYGAAAAASQFIRTTSS 178 44333340.......44444444444444443332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.4E-37	66	261	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.218	68	122	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MEAENGIRRP NFPLQLLEKK EEEQACSNSG YTPLAITSVS SDSNRPGSSG ALQATEASKK 60 APPKRTSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPSVI 120 AATGTGTIPA NFTSLNISLR SSGSSMSAPS YFRSSYFNPN YNYGAAAAAS QFIRTTSSGA 180 EWERSASTVI MDESQQRRAL FSGGIGLLTS SQVNSSTSSS PMMLNFASGN VSAMMQTKQE 240 LHHEAASNLE QGEGTGQRKR RAGPEEDLSS PQSSTQNLVN NNSNNNNGYL LQSSSGSVQA 300 SHNNPMPAAF WMLPNNSASN SNHIATAAGG GSQNHHDPMW TFPTASSTTT SNMYRGAPIT 360 SGLHFMNFPP VALLPGQQIG SGTGGGDSHS HLGMLAALNA YRPILNGGAT ESPVTGSHQH 420 HGGDDGHDNT CSTTSHR*

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MEAENGIRRP NFPLQLLEKK EEEQACSNSG YTPLAITSVS SDSNRPGSSG ALQATEASKK  60
APPKRTSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG HKSDGETIEW LLQQAEPSVI  120
AATGTGTIPA NFTSLNISLR SSGSSMSAPS YFRSSYFNPN YNYGAAAAAS QFIRTTSSGA  180
EWERSASTVI MDESQQRRAL FSGGIGLLTS SQVNSSTSSS PMMLNFASGN VSAMMQTKQE  240
LHHEAASNLE QGEGTGQRKR RAGPEEDLSS PQSSTQNLVN NNSNNNNGYL LQSSSGSVQA  300
SHNNPMPAAF WMLPNNSASN SNHIATAAGG GSQNHHDPMW TFPTASSTTT SNMYRGAPIT  360
SGLHFMNFPP VALLPGQQIG SGTGGGDSHS HLGMLAALNA YRPILNGGAT ESPVTGSHQH  420
HGGDDGHDNT CSTTSHR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258392.1	1e-132	PREDICTED: transcription factor TCP14
TrEMBL	A0A2P5DAS8	0.0	A0A2P5DAS8_PARAD; TCP transcription factor
STRING	XP_010258392.1	1e-132	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-45	TCP family protein