PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027431.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 538aa MW: 57452.1 Da PI: 5.9849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00036 | 497 | 529 | 18 | 55 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++++ + +K + a++L +A++YIk Lq HL.SW.v1.0.G027431.1 497 ERITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 529 5677788888877.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.099 | 479 | 528 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.0E-7 | 494 | 533 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-8 | 494 | 534 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.53E-4 | 497 | 533 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 538 aa Download sequence Send to blast |
MAEECAESSV ATSSSAVVVP PTNWWDLHPS TAAAAVGSSA LSSWCLHNNN NTNTTTSSGN 60 IPWHNIQAAA AAPNSNSDED VSISTSFTNA SNHSGLTVES SRRLIEPAAS SSDDLMADQQ 120 AASDNHIWSQ VLLNVGNNGD LHNHQDVGEN FLDMLSSSKS NNITSSGMYE PPACDYLKKL 180 DTSSSKYSNT WDNHNHFSSN NFDDQKPMIN INGSSNTTAF NESMIENERL TNKLSNLIST 240 WSIAPPELEM NINTSTATNN NRHYFSPDQT CNISLSSSME DNHLKQTFGD SGAGLFPPCN 300 YLLPSLKLEN GHGGRGGGEI EEAPCPGAEA AGALLRRPYI GAMGGYQVGL NNSSFMAAAD 360 LHNGKYGHYG MPAPPLVDSY SSCSSNVTAT TAKNFADVIS FGGRLGKPLM DLHASNNNKT 420 CINKSLGSSD SSKKQGLQTS TPTKGSGRGQ GNTSSEGKKK RSDNNQDTSE TSLKKSKQEN 480 STASSAKMQM PKVKLGERIT ALQQIVSPFG KTDTASVLYE AIQYIKFLQE QVKVIIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019427.1 | 1e-179 | transcription factor mef2A | ||||
TrEMBL | A0A2P5E0U0 | 0.0 | A0A2P5E0U0_PARAD; Myc-type, basic helix-loop-helix (BHLH) domain containing protein | ||||
STRING | XP_010093361.1 | 1e-179 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10116 | 26 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31050.1 | 6e-23 | bHLH family protein |