PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027425.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 606aa    MW: 64821.5 Da    PI: 9.1709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027425.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.8e-0593115123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C++C+k F r  nL+ H r H
  HL.SW.v1.0.G027425.1  93 FICEICNKGFQRDQNLQLHRRGH 115
                           89*******************88 PP
2zf-C2H212.40.00046169191123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC +C+k++  +s+ k H +t+
  HL.SW.v1.0.G027425.1 169 WKCDKCSKRYAVQSDWKAHSKTC 191
                           58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.99E-792115No hitNo description
Gene3DG3DSA:3.30.160.601.7E-592115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02293115IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84593115IPR007087Zinc finger, C2H2
PfamPF121717.5E-593115IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SMARTSM00355240134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.99E-7164189No hitNo description
SMARTSM00355140169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MMLFQQQQEQ QQQARVDENM SNLTSASGDQ ASVSSSGNRA EIGTNNGFSQ QYFASPPPQS  60
QPPKKKRNLP GNPDPDAEVI ALSPKTLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSKEVK KKVYVCPEAS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARAING GVGGPGAGAG  240
AGTNPLGSSS SAILSHLNLQ TQLLNNHNSH HQDLHSFPLK KEQQSFTTAT TASGLIRQDI  300
PPWLACSPTQ MDLSNSSSSI FSARSLDQDY TQQTHHQDNL TLLQSPNPNP NLGGGGGGGG  360
GGGSGNGNGG PTLPPHYQPP PLAHMSATAL LQKAAQIGAT MSGGGNNNSS TNNNTMAAGS  420
AASPVMMMRT HQDSGANNNF GLNLSPRDRQ HHHHQHQDQT APTGHGFGNK SSGSNSTTTS  480
LLQEYMMSSL SSATTGTGIS TSSTSTTAGF RDHNHDPFNG VILGSSKKDG HDHLRTTNPT  540
VMESGGSAGG GGNVSNGNGE GLTRDFLGLR PLSHTEMLNM AALGNTINMS HPHHHQQNNQ  600
SQKPW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34165226364Zinc finger protein JACKDAW
5b3h_F6e-34165226364Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-126AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022715150.10.0protein indeterminate-domain 7-like isoform X1
TrEMBLA0A2P5BH910.0A0A2P5BH91_PARAD; TFIIH C1-like domain containing protein
STRINGcassava4.1_004983m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-109indeterminate(ID)-domain 2