PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G027380.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

G2-like

Protein Properties

Length: 376aa MW: 41734.1 Da PI: 8.6152

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G027380.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	32	86	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl HL.SW.v1.0.G027380.1 32 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 86 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-32	29	87	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.347	29	89	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-16	31	87	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	32	87	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	34	84	IPR001005	SANT/Myb domain
Pfam	PF14379	5.1E-22	128	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010088	Biological Process	phloem development
GO:0010089	Biological Process	xylem development
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MFQHKKPSTM NAHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP 60 KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DGMRASALEL QRNTASSSAM 120 ISRSMNEMQM EVQRRLHEQL EVQKHLQLRI EAQGKYMQSI LEKACQTLAG ENMASGSYKG 180 SIVNQGVHSH PHPHHHHHHH DMGSTMKDFS SPLGFPSFQD LNIYGGGDQL DLQQNMERSS 240 SMDGFLPNNN SNDTLCLGKK RASPYSGSGK SPLIWSDDLR LQDLGTAASC LGQPDDPFKG 300 DQIQMALPSS TERGSEIDSL SDIYETKPVI SSSGDHMGEK KFDGAGTKLE RPSPRRAPLS 360 DRMSPMIQGR NSPYG*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MFQHKKPSTM NAHDRPMCVQ GDSGLVLTTD PKPRLRWTVE LHERFVDAVT QLGGPDKATP  60
KTIMRVMGVK GLTLYHLKSH LQKFRLGKQP HKEFNDHSIK DGMRASALEL QRNTASSSAM  120
ISRSMNEMQM EVQRRLHEQL EVQKHLQLRI EAQGKYMQSI LEKACQTLAG ENMASGSYKG  180
SIVNQGVHSH PHPHHHHHHH DMGSTMKDFS SPLGFPSFQD LNIYGGGDQL DLQQNMERSS  240
SMDGFLPNNN SNDTLCLGKK RASPYSGSGK SPLIWSDDLR LQDLGTAASC LGQPDDPFKG  300
DQIQMALPSS TERGSEIDSL SDIYETKPVI SSSGDHMGEK KFDGAGTKLE RPSPRRAPLS  360
DRMSPMIQGR NSPYG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	32	88	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018818.1	0.0	myb family transcription factor APL isoform X1
Swissprot	Q9SAK5	1e-134	APL_ARATH; Myb family transcription factor APL
TrEMBL	W9R1F0	0.0	W9R1F0_9ROSA; Myb family transcription factor APL
STRING	XP_010092480.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-137	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]