PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027344.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 278aa MW: 31514.7 Da PI: 5.1249 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.7e-19 | 59 | 113 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f++eq++ Le++Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k HL.SW.v1.0.G027344.1 59 NNKRRFSDEQIKSLESMFESETRLEPRKKLQLASELGLQPRQVAIWFQNKRARWK 113 67889*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.4 | 8.1e-38 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ + HL.SW.v1.0.G027344.1 60 NKRRFSDEQIKSLESMFESETRLEPRKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLSNYKNLASRFDALKKEKQGLALQ 148 79************************************************************************************999 PP HD-ZIP_I/II 91 lke 93 l++ HL.SW.v1.0.G027344.1 149 LQK 151 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-20 | 35 | 117 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-20 | 52 | 114 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.301 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-17 | 57 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-16 | 58 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.10E-15 | 58 | 116 | No hit | No description |
PRINTS | PR00031 | 1.3E-5 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.2E-14 | 115 | 155 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MFEDQNNIHG EYSYCPTSES IDHSNNINIH DSSFSNSSST SSSGAGVLVL GSRKKKSRNN 60 KRRFSDEQIK SLESMFESET RLEPRKKLQL ASELGLQPRQ VAIWFQNKRA RWKSKQLERD 120 YSILLSNYKN LASRFDALKK EKQGLALQLQ KLNGDLMQSS KDHNLHKDNN EKDSDNGKMK 180 TESESEVKPS LSSLERSEHV LGVLSDDDSS MKAVYNFEQV LEHEEAELLS MNMNMAPEPP 240 AAAADSSLTS PEDWGSLNSE TLFDESTSGY QWWDFWS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00320 | DAP | Transfer from AT2G46680 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022757591.1 | 2e-83 | homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2P5FIG7 | 1e-122 | A0A2P5FIG7_TREOI; Octamer-binding transcription factor | ||||
STRING | GLYMA16G02390.1 | 6e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5635 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 9e-52 | homeobox 7 |