PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G027344.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31514.7 Da    PI: 5.1249
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G027344.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1959113256
                           T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            ++++f++eq++ Le++Fe++  +  +++ +LA++lgL+ rqV +WFqN+Ra++k
  HL.SW.v1.0.G027344.1  59 NNKRRFSDEQIKSLESMFESETRLEPRKKLQLASELGLQPRQVAIWFQNKRARWK 113
                           67889*************************************************9 PP

2HD-ZIP_I/II117.48.1e-3860151293
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +krr+s+eq+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ +
  HL.SW.v1.0.G027344.1  60 NKRRFSDEQIKSLESMFESETRLEPRKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLSNYKNLASRFDALKKEKQGLALQ 148
                           79************************************************************************************999 PP

           HD-ZIP_I/II  91 lke 93 
                           l++
  HL.SW.v1.0.G027344.1 149 LQK 151
                           986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.84E-2035117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-2052114IPR009057Homeodomain-like
PROSITE profilePS5007118.30155115IPR001356Homeobox domain
SMARTSM003895.7E-1757119IPR001356Homeobox domain
PfamPF000461.6E-1658113IPR001356Homeobox domain
CDDcd000867.10E-1558116No hitNo description
PRINTSPR000311.3E-58695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.3E-595111IPR000047Helix-turn-helix motif
PfamPF021837.2E-14115155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MFEDQNNIHG EYSYCPTSES IDHSNNINIH DSSFSNSSST SSSGAGVLVL GSRKKKSRNN  60
KRRFSDEQIK SLESMFESET RLEPRKKLQL ASELGLQPRQ VAIWFQNKRA RWKSKQLERD  120
YSILLSNYKN LASRFDALKK EKQGLALQLQ KLNGDLMQSS KDHNLHKDNN EKDSDNGKMK  180
TESESEVKPS LSSLERSEHV LGVLSDDDSS MKAVYNFEQV LEHEEAELLS MNMNMAPEPP  240
AAAADSSLTS PEDWGSLNSE TLFDESTSGY QWWDFWS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022757591.12e-83homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A2P5FIG71e-122A0A2P5FIG7_TREOI; Octamer-binding transcription factor
STRINGGLYMA16G02390.16e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-52homeobox 7