PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G027172.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | SBP | ||||||||
Protein Properties | Length: 139aa MW: 15704 Da PI: 6.9346 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.5 | 3.3e-42 | 52 | 128 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+++C+adl+eak+yhrrhk+Ce+h+ka+vv v+gl+qrfCqqCsrfh lsefD++krsCrrrLa+hnerrrk+++ HL.SW.v1.0.G027172.1 52 CQADNCSADLTEAKHYHRRHKICEFHAKASVVSVAGLQQRFCQQCSRFHGLSEFDDTKRSCRRRLAGHNERRRKSSS 128 **************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF037575 | 1.3E-54 | 1 | 138 | IPR017238 | Squamosa promoter-binding protein |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-34 | 45 | 113 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.949 | 49 | 126 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.28E-38 | 51 | 130 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.0E-32 | 52 | 125 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEPNRAQGKR SFKYQMGEEM EEEEEEEDED DDVSGLGRSG SSVGGSTRPS SCQADNCSAD 60 LTEAKHYHRR HKICEFHAKA SVVSVAGLQQ RFCQQCSRFH GLSEFDDTKR SCRRRLAGHN 120 ERRRKSSSDL HNHREGSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-37 | 45 | 125 | 4 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010108163.1 | 6e-52 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q38741 | 2e-48 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A2P5CK13 | 9e-56 | A0A2P5CK13_TREOI; SBP-box transcription factor | ||||
STRING | XP_010108163.1 | 2e-51 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF535 | 34 | 153 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 3e-40 | squamosa promoter binding protein-like 3 |
Publications ? help Back to Top | |||
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