PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026835.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 310aa    MW: 34545.5 Da    PI: 6.3747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026835.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-21110159255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  HL.SW.v1.0.G026835.1 110 VYRGIRQRP-WGKWAAEIRDPQ----KgSRVWLGTYNTAEEAARAYDEAAKRIRG 159
                           69*******.**********94....34************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-15110159IPR001471AP2/ERF domain
PROSITE profilePS5103223.788110167IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22110167IPR016177DNA-binding domain
SMARTSM003801.6E-36110173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32110168IPR001471AP2/ERF domain
PRINTSPR003671.2E-11111122IPR001471AP2/ERF domain
CDDcd000181.68E-32111166No hitNo description
PRINTSPR003671.2E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MCGGAIISDF VAGKRGRKLT PENVWSELDT ISNLFGLDNN YFNGNNNTNS NHLFNHVTAS  60
QNPKRPTTKV AVTKDNKAQK IKNRAKEEDE EGSDGISSTT KSGLRARKNV YRGIRQRPWG  120
KWAAEIRDPQ KGSRVWLGTY NTAEEAARAY DEAAKRIRGD KAKLNFSKQQ PAPARVAPPL  180
KKQCVVPEMT QPSSTTTCQT MTEPPQTTSY SYATVGYVPM FQNELLPGNY DGFYCKDEAV  240
MEPSEMELNE QILSLESLLG LEPNMAQTSQ MSGSGHDQEV EEEGAEPVSL WMLDDVVTHQ  300
QHSQRILYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22111166359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.12e-82PREDICTED: ethylene-responsive transcription factor RAP2-3
TrEMBLA0A2P5CLP17e-86A0A2P5CLP1_PARAD; AP2/ERF transcription factor
STRINGGorai.011G193600.17e-82(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-43ethylene-responsive element binding protein