PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G026813.1 | ||||||||
Common Name | bHLH2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 581aa MW: 64157.9 Da PI: 5.0242 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.7 | 1.2e-14 | 360 | 407 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++h ++ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ HL.SW.v1.0.G026813.1 360 ANHVMAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 407 5899***********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.1E-11 | 25 | 65 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.638 | 357 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-20 | 359 | 429 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-12 | 360 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-19 | 361 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.48E-16 | 361 | 411 | No hit | No description |
SMART | SM00353 | 2.5E-18 | 363 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MEYKILSQLT YVSLMFLCMG AIVPHQSAGV QTVVCIPLLD GVVEFGTTER VKEDLGFIQH 60 AKTFFIDHHH HLTNSLPSKP ALSEQSTSNP ATSDNPRFHS QPMTTAIYSG AATGVVDETK 120 EDEGDEEDDD MDEEEAAESD SEAEIGRSNV GGGPISAQNT SGEAVVPAEP SELMQLDMSE 180 DIRLGSPDDG SNNLDSDFHL LAVSQSERHL CQPDSYPAES TPRWPLLPDP TTNIGLLLPS 240 SGATDPLEDL THEDTHYSQT VSAILQNQPS LWTESSSAGY VMYSTQSAFA KWTNLSDHHS 300 IFHMSPSAES TSQWLLKYIL FSVPLLHTKY RDENSPKAGA GDTTTRSFRK GGTPQDELSA 360 NHVMAERRRR EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKV QDLESRNRLM 420 ELDQRSMKPA VPQRTCSTGS LKDQRSGLTS VDRIRVEKPG SEKRKLRIVE GIHGVAKPKS 480 VDQSASPPPS TRAETTVQVS IIENDGLLEL QCPYREGLLL ELMQMLKDLR IETTTVNSSL 540 SDGFFSIELR AKVKENVNGR KASIVEVKRA INQIIPHSDS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_B | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_E | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_F | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_G | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_I | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_M | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
5gnj_N | 2e-14 | 361 | 422 | 8 | 74 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 365 | 370 | ERRRRE |
2 | 366 | 371 | RRRREK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR751553 | 0.0 | FR751553.1 Humulus lupulus mRNA for basic helix-loop-helix transcription factor (bHLH2 gene), cultivar Osvald's 72, clone 3497. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015892114.1 | 0.0 | basic helix-loop-helix protein A | ||||
Swissprot | E3SXU4 | 1e-169 | BHLHW_PEA; Basic helix-loop-helix protein A | ||||
TrEMBL | G7ZLA2 | 0.0 | G7ZLA2_HUMLU; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010090392.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3637 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 4e-49 | bHLH family protein |
Publications ? help Back to Top | |||
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