PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G026792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 18994.5 Da PI: 8.1352 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.9 | 1.2e-45 | 21 | 120 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ HL.SW.v1.0.G026792.1 21 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPVHHRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDV 109 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+lal+++e HL.SW.v1.0.G026792.1 110 LQAQLALAQAE 120 ******99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.162 | 20 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-45 | 21 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MKDTSSSGGG GGGRKQGAPS PCAACKLLRR RCAQDCVFAP YFPADEPQKF ANVHKVFGAS 60 NVNKMLQELP VHHRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDVL QAQLALAQAE 120 VVHLRVRQNA SLSSHGLSPA SPSNSDSPSS KLMGSQPKPI FEMDMSVDQG SFGETMWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-49 | 17 | 122 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-49 | 17 | 122 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022777251.1 | 1e-105 | LOB domain-containing protein 4 isoform X1 | ||||
Swissprot | Q9SHE9 | 1e-76 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A314YWZ3 | 1e-104 | A0A314YWZ3_PRUYE; LOB domain-containing protein 4 | ||||
STRING | XP_009353911.1 | 1e-103 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1334 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-71 | LOB domain-containing protein 4 |