PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G026753.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | GRF | ||||||||
Protein Properties | Length: 200aa MW: 22260 Da PI: 9.6965 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 103 | 146 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+ep+rCrRtDGKkWRCs+++l+ +k+CErH+hrgr+rsrk ++ HL.SW.v1.0.G026753.1 103 DNEPWRCRRTDGKKWRCSKEALPHQKYCERHIHRGRHRSRKLVD 146 68***************************************987 PP | |||||||
2 | QLQ | 38.6 | 3.4e-14 | 41 | 74 | 3 | 36 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT Ql++L Q l+yKy+ a++PvP +L+q+i+ HL.SW.v1.0.G026753.1 41 FTILQLHELQLQTLIYKYIEAGLPVPYNLVQPIW 74 7778*****************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.9E-4 | 39 | 75 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.645 | 40 | 75 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.4E-11 | 41 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.417 | 103 | 147 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.0E-20 | 105 | 145 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MAHFTSSGFG QEEGSSQIGL NLELGRGVCQ NKRSSSSYHG FTILQLHELQ LQTLIYKYIE 60 AGLPVPYNLV QPIWQSFSSS ITGLNNGLGV VGPLYLDSRK GMDNEPWRCR RTDGKKWRCS 120 KEALPHQKYC ERHIHRGRHR SRKLVDSCNS KTTTMANTST SNNGGGGIGS TMTDLSISLH 180 VNENNTRGFL FPRLDFQPN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024029096.1 | 2e-58 | growth-regulating factor 10 | ||||
Swissprot | Q6EPP9 | 4e-38 | GRF10_ORYSJ; Growth-regulating factor 10 | ||||
TrEMBL | A0A2P5CSQ9 | 5e-86 | A0A2P5CSQ9_TREOI; Growth-regulating factor | ||||
STRING | VIT_02s0025g04910.t01 | 8e-55 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-29 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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