PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026687.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 526aa    MW: 55465.1 Da    PI: 8.7775
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026687.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061105127123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ C+k F++   L  H  +H
  HL.SW.v1.0.G026687.1 105 YKCSVCNKAFTSYQALGGHKASH 127
                           9***********99999888877 PP
2zf-C2H212.10.00061351373123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ C+k F++   L  H  +H
  HL.SW.v1.0.G026687.1 351 YKCSVCNKAFTSYQALGGHKASH 373
                           9***********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0066105127IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.95E-9105127No hitNo description
PROSITE profilePS5015710.575105132IPR007087Zinc finger, C2H2
PfamPF139121.4E-12105129IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
SuperFamilySSF576671.95E-9158185No hitNo description
PfamPF139123.9E-13162187IPR007087Zinc finger, C2H2
SMARTSM003550.18163185IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
SMARTSM003550.0066351373IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.31E-9351373No hitNo description
PROSITE profilePS5015710.575351378IPR007087Zinc finger, C2H2
PfamPF139121.4E-12351375IPR007087Zinc finger, C2H2
PROSITE patternPS000280353373IPR007087Zinc finger, C2H2
SuperFamilySSF576677.31E-9404431No hitNo description
PfamPF139123.9E-13408433IPR007087Zinc finger, C2H2
SMARTSM003550.18409431IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328409431IPR007087Zinc finger, C2H2
PROSITE patternPS000280411431IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009644Biological Processresponse to high light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010117Biological Processphotoprotection
GO:0010200Biological Processresponse to chitin
GO:0015979Biological Processphotosynthesis
GO:0035264Biological Processmulticellular organism growth
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MALEALNSPT TANPFSTYNQ DTETLQFHEP WIKRKRSKRP RLEQDHPSPP SEEEYLALCL  60
IMLARSGGSA TSSPPANSSS SAQGPAHDGG AHRLPPQPPS LKLSYKCSVC NKAFTSYQAL  120
GGHKASHRKS SNSSSDGAAT AAADNVSTST VSTTVPASSG RTHECSICHK TFPTGQALGG  180
HKRCHYDGGS GNSASGGGVT SSEGAASSMS HSHSHNQSQI SQRGFDLNMP ALPEFWPGFT  240
IEVNNKKSQL SGIDQEVESP LPMKKPRLSN LEDFGPWIKR KRSKRPRLEQ DHPSPPSEEE  300
YLALCLIMLA RSGGSATSSP PANSSSSAQG PAHDGGAHRL PPQPPSLKLS YKCSVCNKAF  360
TSYQALGGHK ASHRKSSNSS SDGAATAAAD NVSTTTVSTT VPASSGRTHE CSICHKTFPT  420
GQALGGHKRC HYDGGSGNSA SGGGVTSSEG AASSMSHSHS HNQSQISQRG FDLNMPALPE  480
FWPGFTIEVN NKKSQLSGID QEVESPLPMK KPRLSNLEDF GVSRN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00162DAPTransfer from AT1G27730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023915570.11e-127zinc finger protein ZAT9-like
TrEMBLA0A2P5DNE41e-111A0A2P5DNE4_PARAD; Zinc finger transcription factor
STRINGXP_008236445.18e-84(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.17e-43salt tolerance zinc finger