PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026506.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family CO-like
Protein Properties Length: 387aa    MW: 41446.4 Da    PI: 5.275
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026506.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.3e-061657438
              zf-B_box  4 rkCpeHee.kelqlfCedCqqllCedClleeHkg......Ht 38
                          r C+ +++   +  fC+ ++ +lC +C  ++H        H+
  HL.SW.v1.0.G026506.1 16 RPCDSCKSaASAAVFCRADSAFLCLSCDAKIHCAnklasrHE 57
                          68*****9556********************95545666665 PP
2zf-B_box26.71.2e-0859104342
              zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                            ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  HL.SW.v1.0.G026506.1  59 VWVCEVCEQAPAAVTCKADAASLCVSCDADIHSAnplaqrHERVPV 104
                           689*****************************66899999999986 PP
3CCT69.31e-23310353144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea++lRYkeKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  HL.SW.v1.0.G026506.1 310 REARVLRYKEKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 353
                           9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-111361IPR000315B-box-type zinc finger
CDDcd000213.35E-71661No hitNo description
PROSITE profilePS501199.5271861IPR000315B-box-type zinc finger
PROSITE profilePS5011910.62357104IPR000315B-box-type zinc finger
PfamPF006438.3E-758104IPR000315B-box-type zinc finger
CDDcd000211.27E-860104No hitNo description
SMARTSM003362.7E-962104IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648310352IPR010402CCT domain
PfamPF062031.2E-17310352IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGLIGNAGGG WGIAGRPCDS CKSAASAAVF CRADSAFLCL SCDAKIHCAN KLASRHERVW  60
VCEVCEQAPA AVTCKADAAS LCVSCDADIH SANPLAQRHE RVPVEPFYDS TDSIVRSSAA  120
LNFFAVPASG ACSDETGGGA CRPDEEVGVV DAPTPWMISN PNFGSKLMAE APDVVKSTDH  180
LFFSEMDSFL DFDYPSTIHS SSVTDSVVPV KIKPNPPSPI VNNSENYFDL DFCRSKLSSF  240
NYPAQCLSQS VSSSSLDVGV VPDGSSMSEI SFSFGRSLSQ NNNVSSTDPI PSISASTNSS  300
EPTQLCGLDR EARVLRYKEK RKNRRFEKTI RYASRKAYAE TRPRIKGRFA KRTETEADLD  360
LEPIYGSAAA AAAFIAESQY GVVPTF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024928544.11e-176zinc finger protein CONSTANS-LIKE 5
RefseqXP_024928545.11e-176zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-115COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2P5CC220.0A0A2P5CC22_TREOI; Zinc finger-domain containing protein
STRINGXP_010102982.11e-159(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-104CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]