PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G026486.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | ERF | ||||||||
Protein Properties | Length: 310aa MW: 34525.6 Da PI: 6.3747 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.2e-21 | 110 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + r++lg++ taeeAa+a+++a+k+++g HL.SW.v1.0.G026486.1 110 VYRGIRQRP-WGKWAAEIRDPQ----KgSRVWLGTYNTAEEAARAYDEAAKRIRG 159 69*******.**********94....34************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.788 | 110 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-15 | 110 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-22 | 110 | 167 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.0E-36 | 110 | 173 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-32 | 110 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.27E-32 | 111 | 167 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008219 | Biological Process | cell death | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051707 | Biological Process | response to other organism | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MCGGAIISDF VAGKRGRKLT PENVWSELDT ISNLFGLDNN YFNGNNNTNS NHLFNHVTAS 60 QNPKRPTTKV AVTKDNKAQK IKNRAKEEDE EGSDGISSTT KSGLRARKNV YRGIRQRPWG 120 KWAAEIRDPQ KGSRVWLGTY NTAEEAARAY DEAAKRIRGD KAKLNFAKQQ PAPARVAPPL 180 KKQCVVPEMT QPSSTTTCQT MTEPPQTTSY SYATVGYVPM FQNELLPGNY DGFYCKDEAV 240 MEPSEMELNE QILSLESLLG LEPNMAQTSQ MSGSGHDQEV EEEGAEPVSL WMLDDVVPHQ 300 QHSQRILYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 111 | 166 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00109 | PBM | Transfer from AT3G16770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012455978.1 | 2e-81 | PREDICTED: ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2P5CLP1 | 2e-84 | A0A2P5CLP1_PARAD; AP2/ERF transcription factor | ||||
STRING | Gorai.011G193600.1 | 6e-81 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4892 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-43 | ethylene-responsive element binding protein |