PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026417.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 357aa    MW: 40150.3 Da    PI: 6.7958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026417.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-33672071128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                           lp+G++F+Ptd+e++ e+L++kv++++      ++++   ++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++  
  HL.SW.v1.0.G026417.1  67 LPAGVKFDPTDHEIL-EHLEAKVHSDSgklhplIDEFIPtLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVNtd 153
                           799***********9.99******9997775443332222443336**********.555666777******************74445 PP

                   NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g ++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  HL.SW.v1.0.G026417.1 154 edgsETRWHKTGKTRPVFV-GGGVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 207
                           6555788************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-3761226IPR003441NAC domain
PROSITE profilePS5100532.68667226IPR003441NAC domain
PfamPF023654.7E-1568207IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MTWCDESEEE RSNIQIITAA TTTTTDVSVV TNNNNNTNQS RSVIICPSCG HHIQFQDQAG  60
IHDLPGLPAG VKFDPTDHEI LEHLEAKVHS DSGKLHPLID EFIPTLEGEN GICYTHPEKL  120
PGVSKDGQIR HFFHRPSKAY TTGTRKRRKV NTDEDGSETR WHKTGKTRPV FVGGGVKGFK  180
KILVLYTNYG RQRKPEKTNW VMHQYHLGNN EEEKDGELVA SKVFYQTQPR QCGSSSLIIK  240
DQSIIFDHTT TSTTTTTSMN MRSSSGFEDD DDHHHRDRDC DQDHGHNHYH LAKKATLHQV  300
GQYNNYSIPN PFLNYDDEGS HNRESPPQLI PNLVVQGDGS SFIHRLTTDA SKGKLS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111169.11e-165NAC domain-containing protein 73
RefseqXP_024031061.11e-165NAC domain-containing protein 73
SwissprotO494591e-119NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2P5CHY20.0A0A2P5CHY2_TREOI; NAC domain containing protein
STRINGXP_010111169.11e-164(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-110NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]