PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026385.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 268aa    MW: 28938.3 Da    PI: 6.8483
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026385.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.17.3e-39591601101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq++
  HL.SW.v1.0.G026385.1  59 PCGACKFLRRKCVSGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVNRRHDAVVTISYEAQARLADPVYGCVSTILALQQQVA 147
                           7***********************9989************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                           +l++el+ ++++l
  HL.SW.v1.0.G026385.1 148 SLQSELVIVQTQL 160
                           *******999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.71558160IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3859157IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSDHISPTTR VLDSRRKSTT KRATATSTST SSALLLQPDH ELGEAAAAAP LTTAAPPAPC  60
GACKFLRRKC VSGCIFAPHF GSDQGAARFA AVHKVFGASN VSKLLLHIPV NRRHDAVVTI  120
SYEAQARLAD PVYGCVSTIL ALQQQVASLQ SELVIVQTQL MNSRFAFANV VQSSQHEQQQ  180
QQQQQQMQQH NVAVLQPAYS NNSSTSNNLI NITSFTSNFE LATSATATLS SQSLEPLQLS  240
RPSNDDDEDE EESQIPHVFP TEMLHRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-38481661115LOB family transfactor Ramosa2.1
5ly0_B3e-38481661115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015867842.11e-103LOB domain-containing protein 20
SwissprotQ9SRV31e-78LBD20_ARATH; LOB domain-containing protein 20
TrEMBLB9SI791e-102B9SI79_RICCO; LOB domain-containing protein, putative
STRINGXP_002525698.11e-103(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.11e-54LOB domain-containing protein 20