PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G026314.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

GRAS

Protein Properties

Length: 752aa MW: 81800 Da PI: 6.5623

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G026314.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	331.7	1.4e-101	387	750	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 ++L+++Ae + +g+++ aq +Larl+++ sp g+p++R+a+yf+eAL+ +++ + ++l +++p++ s+ +++ ++ a+k+fsevsP HL.SW.v1.0.G026314.1 387 LDQLYKAAELIGTGNFSHAQGILARLNHQLSPVGKPLHRAAFYFKEALNLLILNnNNNSLNNTIPSRCPSPFDVIFKMGAYKVFSEVSP 475 679**********************************************9997889999************************ PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +++f ++t Nqa+lea+++++r+Hi+Dfdi+ G+QW++++q+L R++gppsl+iT+++sp++++ el ++++La+fA+e+gv fe HL.SW.v1.0.G026314.1 476 LIQFVNFTSNQALLEALDNADRIHIVDFDIGFGAQWASFMQELPVRNRGPPSLKITAFASPSTHHPVELALMRDNLAQFANEIGVAFEL 564 ************************************************************************************* PP GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 +v+ ++le+ ++++ ++ gE++aVn+ + + +++++l++ +L++vk+lsPk+vv ++ +d+++ +F +++l+al+ y HL.SW.v1.0.G026314.1 565 EVVNFDSLEQTSYSMPFFRAeGEVVAVNFPI--WSASNQPAALPN----LLRFVKQLSPKIVVSLDRGCDRSDLPFPQHILQALHSYIN 647 999**9999877777****99..556667999999....************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 l++sl+a +s++ +k+E++ll+++i+++v + ++ ++ W+ + +aG++pv++s+++++qa+++ +++++ g++ve+++ HL.SW.v1.0.G026314.1 648 LLESLDAV-NVASDAVNKIEKFLLQPKIESAVLGRLRA----PDKMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTPVTGFHVEKRQ 731 *665.56999***************99998....999**************************************** PP GRAS 356 gslvlgWkdrpLvsvSaWr 374 +sl l+W++r+L+svSaWr HL.SW.v1.0.G026314.1 732 ASLSLCWQRRELISVSAWR 750 ****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.47	360	730	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-99	387	750	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MRRSPSPPTS AASTLSSSFG GGGGGDTDNN TGGVATTLPP EPPLAPTATA ASRKDEWASE 60 LQPIAAGLEA VTGVGGSVLS ERCGLVVGLE DWENMLSETA ASSPGQDHSL LRWIAGDMED 120 PSSFGLKQLL QGGNNLLEFD GNAGGLGIVD QGPGFDHIGG VSGSLMAGIN PSLAFSGSGF 180 MNNDGNNGGG GKIGSIGLTS SSGVVTNCNM QNPIYSNSGN GLPLPVSLPH GMIYQPPQHQ 240 HFDGSDEKPQ ILNPQSLMNQ QQQATTQFYS QNPNFFLPLE QHQLHHPQSK RHNSGGVDPT 300 SQIPKVSPFC DPGHEHLLRK HQHQQQHQQQ YHLGFPQGMQ FLPQQKPLMQ KVVVGSGDEM 360 TAHNHNNHQQ QQQQQHQQLQ QHQHALLDQL YKAAELIGTG NFSHAQGILA RLNHQLSPVG 420 KPLHRAAFYF KEALNLLILN NNNNSLNNTI PSRCPSPFDV IFKMGAYKVF SEVSPLIQFV 480 NFTSNQALLE ALDNADRIHI VDFDIGFGAQ WASFMQELPV RNRGPPSLKI TAFASPSTHH 540 PVELALMRDN LAQFANEIGV AFELEVVNFD SLEQTSYSMP FFRAEGEVVA VNFPIWSASN 600 QPAALPNLLR FVKQLSPKIV VSLDRGCDRS DLPFPQHILQ ALHSYINLLE SLDAVNVASD 660 AVNKIEKFLL QPKIESAVLG RLRAPDKMPL WKTLFASAGY TPVTFSNFTE TQAECVAKRT 720 PVTGFHVEKR QASLSLCWQR RELISVSAWR C*

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MRRSPSPPTS AASTLSSSFG GGGGGDTDNN TGGVATTLPP EPPLAPTATA ASRKDEWASE  60
LQPIAAGLEA VTGVGGSVLS ERCGLVVGLE DWENMLSETA ASSPGQDHSL LRWIAGDMED  120
PSSFGLKQLL QGGNNLLEFD GNAGGLGIVD QGPGFDHIGG VSGSLMAGIN PSLAFSGSGF  180
MNNDGNNGGG GKIGSIGLTS SSGVVTNCNM QNPIYSNSGN GLPLPVSLPH GMIYQPPQHQ  240
HFDGSDEKPQ ILNPQSLMNQ QQQATTQFYS QNPNFFLPLE QHQLHHPQSK RHNSGGVDPT  300
SQIPKVSPFC DPGHEHLLRK HQHQQQHQQQ YHLGFPQGMQ FLPQQKPLMQ KVVVGSGDEM  360
TAHNHNNHQQ QQQQQHQQLQ QHQHALLDQL YKAAELIGTG NFSHAQGILA RLNHQLSPVG  420
KPLHRAAFYF KEALNLLILN NNNNSLNNTI PSRCPSPFDV IFKMGAYKVF SEVSPLIQFV  480
NFTSNQALLE ALDNADRIHI VDFDIGFGAQ WASFMQELPV RNRGPPSLKI TAFASPSTHH  540
PVELALMRDN LAQFANEIGV AFELEVVNFD SLEQTSYSMP FFRAEGEVVA VNFPIWSASN  600
QPAALPNLLR FVKQLSPKIV VSLDRGCDRS DLPFPQHILQ ALHSYINLLE SLDAVNVASD  660
AVNKIEKFLL QPKIESAVLG RLRAPDKMPL WKTLFASAGY TPVTFSNFTE TQAECVAKRT  720
PVTGFHVEKR QASLSLCWQR RELISVSAWR C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-32	392	749	25	378	Protein SCARECROW
5b3h_A	2e-32	392	749	24	377	Protein SCARECROW
5b3h_D	2e-32	392	749	24	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015881407.1	0.0	scarecrow-like protein 22
TrEMBL	A0A2P5F5D3	0.0	A0A2P5F5D3_TREOI; GRAS transcription factor
STRING	XP_008238556.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13269	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-122	GRAS family protein