PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | HL.SW.v1.0.G026311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 323aa MW: 36991.9 Da PI: 5.8862 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.7 | 5.2e-40 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 aCaaCk++rrkC+++C+lap fp+++p++f+ +h+lFG++n+l++lk +++ +r+dam+s++ye+++r + Pv+G+vg+i+ lq q++q HL.SW.v1.0.G026311.1 10 ACAACKYQRRKCSRECPLAPFFPSDRPQRFQHAHRLFGVRNILNILKVVSPCQRQDAMTSIIYESDMRKQFPVQGCVGIINLLQTQIDQ 98 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 +++e+++++++ HL.SW.v1.0.G026311.1 99 MQEEIHAIQSK 109 ******99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.406 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-37 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 323 aa Download sequence Send to blast |
MTIKGGTTQA CAACKYQRRK CSRECPLAPF FPSDRPQRFQ HAHRLFGVRN ILNILKVVSP 60 CQRQDAMTSI IYESDMRKQF PVQGCVGIIN LLQTQIDQMQ EEIHAIQSKI LLFKQQQQHQ 120 QQIIPFSSST PDDDHHHYNN LQLATTTVTS NDHNTVLDQL QHVHIDHDHH HNQYNDTTPT 180 GVYFSNYDFL TEENDKVDGV STGIDGTDLD HNNQDPGHNK EMMKMHQHYH QQSDLINPSS 240 LIDMNEIAPP AHLRPTLFFV PSPQDQHDQE EVDLCYDDQC TAAFDNIVDD RQSFIESKGP 300 CESSAESSMK HATQYVKNEH NY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-39 | LOB domain-containing protein 27 |