PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026259.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 235aa    MW: 26663 Da    PI: 8.1834
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026259.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1972125356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           k+ ++t++qle Le+ F+++ +++ +++ +L++ lgL+ rq+ vWFqNrRa++k
  HL.SW.v1.0.G026259.1  72 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWK 125
                           56679************************************************9 PP
2HD-ZIP_I/II116.51.5e-3772162292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           kk+rl+++q+++LE+sF+ee kL+p+rK++l+r+Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++da+++e+++L++ev +L+  
  HL.SW.v1.0.G026259.1  72 KKKRLTTDQLESLERSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLERLYDALKQELDAMSKEKQKLQEEVMKLKGM 160
                           9*************************************************************************************987 PP

           HD-ZIP_I/II  91 lk 92 
                           l+
  HL.SW.v1.0.G026259.1 161 LR 162
                           76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1955129IPR009057Homeodomain-like
PROSITE profilePS5007117.21667127IPR001356Homeobox domain
SMARTSM003894.5E-1670131IPR001356Homeobox domain
CDDcd000865.36E-1672128No hitNo description
PfamPF000469.5E-1772125IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-2074134IPR009057Homeodomain-like
PRINTSPR000317.6E-598107IPR000047Helix-turn-helix motif
PROSITE patternPS000270102125IPR017970Homeobox, conserved site
PRINTSPR000317.6E-5107123IPR000047Helix-turn-helix motif
PfamPF021831.4E-7127161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDWNSNLRLV SRPECSYGFL YNYNYDQYQG MDMKHHQAAL MGETTQGLGL LGVPSMEKVN  60
GSSSSYGSHQ DKKKRLTTDQ LESLERSFQE EIKLDPDRKM KLSRDLGLQP RQIAVWFQNR  120
RARWKAKQLE RLYDALKQEL DAMSKEKQKL QEEVMKLKGM LREQGGWKQV STTGGYTEIS  180
GEDTVESTSA GAIRSTSKSL GTNPMGAAAE CSHHILNVEE YNPVSPPYWL PSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119127RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015898574.11e-112putative homeobox-leucine zipper protein ATHB-51 isoform X1
SwissprotQ9LZR05e-54ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5FVQ01e-124A0A2P5FVQ0_TREOI; Octamer-binding transcription factor
STRINGXP_008241330.11e-105(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-56homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]