PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026175.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 346aa    MW: 37668 Da    PI: 5.5767
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026175.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.66.1e-2744138186
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWt+qe+l+Li+++r  e+++rr +         + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e +r+++s s ++
  HL.SW.v1.0.G026175.1  44 RWTRQEILVLIQGKRVAESKVRRIRtagaafgsgQVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWELQRKDGSDSFWA 132
                           8*********************844445566666**********************************************999999999 PP

              trihelix  81 yfdqle 86 
                           + ++l+
  HL.SW.v1.0.G026175.1 133 MRNDLR 138
                           999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.444110IPR017877Myb-like domain
PfamPF138373.0E-1244134No hitNo description
Gene3DG3DSA:1.10.10.604.0E-544109IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MALELSLPTN PVDTEADGVT NGVDARPSST DGGDDGRRAP RLPRWTRQEI LVLIQGKRVA  60
ESKVRRIRTA GAAFGSGQVE PKWASVSSYC RMHGVNRGPV QCRKRWSNLA GDYKKIKEWE  120
LQRKDGSDSF WAMRNDLRRE RKLPGFFDKE VFDILDAGSG GGVGQQATPV VAPPPAEEME  180
KDATAEEPEE NTVMFDSRRG ATAEDGMFSD FEQEDSVRSP VKEAAAATAT KEAPPAASMG  240
IPAVPISSVA AANVEQPTSN PEIGSTSQEG RKRRRMTFDG DGGETSLQNQ LIDVLERNGK  300
AVASHLDAQN THFQLDREQR KNHSDSLVAV LNKLADALVR ISEKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270274RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895940.11e-180trihelix transcription factor ASR3
SwissprotQ8VZ201e-107ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLA0A2P5F1X80.0A0A2P5F1X8_TREOI; Homeodomain-like
STRINGXP_010100033.11e-163(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-104Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]