PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G026167.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ZF-HD
Protein Properties Length: 340aa    MW: 36770.4 Da    PI: 7.9794
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G026167.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer107.29.6e-3467125360
           ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreveee 60 
                            v Y+eClkNhAa+lGgha+DGCgE+mps++++ +++++lkCaACgCHRn+HRre++e+
  HL.SW.v1.0.G026167.1  67 VVSYRECLKNHAATLGGHALDGCGEYMPSPTATsTDPTSLKCAACGCHRNYHRREPDEQ 125
                           589***************************999899*******************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1768128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.1E-2768122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.45270121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-3070121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.28E-20203275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30208276IPR009057Homeodomain-like
TIGRFAMsTIGR015653.8E-25214271IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEITPTITTT TATNTGSTKS PEAESETPTR IQPIKPVSIS NGVLKRHNPH HHHHHHHHHL  60
AAVTPVVVSY RECLKNHAAT LGGHALDGCG EYMPSPTATS TDPTSLKCAA CGCHRNYHRR  120
EPDEQALPHP TTTHVIEYQP HHRHHPPPPP PHHGGNRSPN SASPPPISSS YYPSAPHMLL  180
ALSTGLSGPG AQENACGVGV AGGGGMVTPS SNSRKRFRTK FSQEQKEKMY QFAERVGWKM  240
QKRDEDIVME FCNEVGVDKG VLKVWMHNNK NTLGKKDVNG GSGGRSNNIL EQTHNNGGSS  300
NNNTNNNSEN DNDNMQNLNH YKDDDGVAHV ATNGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212132721675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879458.11e-125zinc-finger homeodomain protein 9
SwissprotQ9LXG04e-81ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2P5D1Z11e-145A0A2P5D1Z1_TREOI; Octamer-binding transcription factor
STRINGXP_004304301.11e-111(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.13e-73homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]