PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G026083.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | NAC | ||||||||
Protein Properties | Length: 171aa MW: 19682.4 Da PI: 9.8138 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.6e-51 | 22 | 150 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhP+deel+v+yL++kv++++l++ v++e+d+yk++PwdLp k+v +++ ew+fF++rd+ky++g+r+nra+ sgyWkatg+ HL.SW.v1.0.G026083.1 22 LPPGFRFHPSDEELIVHYLQNKVNSRPLPA-LVMAELDLYKYNPWDLPtKAVFGDDGEWFFFTPRDRKYPNGNRPNRAAGSGYWKATGT 109 79***************************9.78***************556666777******************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++l+ +++ +g+kk Lvfy+gr pkg kt+W+m+eyrl HL.SW.v1.0.G026083.1 110 DKHILTCcGTKSIGVKKALVFYQGRPPKGLKTEWIMNEYRL 150 ****99878889***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-57 | 14 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.895 | 22 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-27 | 23 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MDNHDEKKNY NNIETQNAAF QLPPGFRFHP SDEELIVHYL QNKVNSRPLP ALVMAELDLY 60 KYNPWDLPTK AVFGDDGEWF FFTPRDRKYP NGNRPNRAAG SGYWKATGTD KHILTCCGTK 120 SIGVKKALVF YQGRPPKGLK TEWIMNEYRL LDSMVWSAST TFKRKSSMRI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-58 | 17 | 150 | 10 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010107555.2 | 2e-85 | NAC domain-containing protein 18 | ||||
Swissprot | Q8GY42 | 1e-67 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A2P5D7J0 | 2e-92 | A0A2P5D7J0_PARAD; NAC domain containing protein | ||||
TrEMBL | A0A2P5FV13 | 2e-92 | A0A2P5FV13_TREOI; NAC domain containing protein | ||||
STRING | XP_010107555.1 | 2e-85 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2416 | 29 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 5e-70 | NAC domain containing protein 25 |