PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025992.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NAC
Protein Properties Length: 333aa    MW: 38168.5 Da    PI: 8.7572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025992.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24e-50221501128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           lppGfrFhP+deel+v+yL++kv++++l++  v++e+d+yk++PwdLp k+v +++ ew+fF++rd+ky++g+r+nra+ sgyWkatg+
  HL.SW.v1.0.G025992.1  22 LPPGFRFHPSDEELIVHYLQNKVNSRPLPA-LVMAELDLYKYNPWDLPtKAVFGDDGEWFFFTPRDRKYPNGNRPNRAAGSGYWKATGT 109
                           79***************************9.78***************556666777******************************** PP

                   NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           dk++l+  +++ +g+kk Lvfy+gr pkg kt+W+m+eyrl
  HL.SW.v1.0.G025992.1 110 DKHILTCcGTKSIGVKKALVFYQGRPPKGLKTEWIMNEYRL 150
                           ****99878889***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-6014181IPR003441NAC domain
PROSITE profilePS5100558.23422181IPR003441NAC domain
PfamPF023653.3E-2623150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDNHDEKKNY NNIETQNAAF QLPPGFRFHP SDEELIVHYL QNKVNSRPLP ALVMAELDLY  60
KYNPWDLPTK AVFGDDGEWF FFTPRDRKYP NGNRPNRAAG SGYWKATGTD KHILTCCGTK  120
SIGVKKALVF YQGRPPKGLK TEWIMNEYRL LDSMVWSAST TFKRKSSMRL DDWVLCRVRQ  180
KNSMNNSRFN YTWENSRIGN NNEHDLAAGY FDHRQRKTCS VKPSSNNSTS STTTSTTGGQ  240
NQKLDMMIID YLYKDFPMLP YILSTPQLLL PNYSTPSTSS TNITFQTNIN NNSISGHDHD  300
QFSSPYSDHD HDNYSFFNSM KSKHGAPEND IS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-631718210169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107555.21e-113NAC domain-containing protein 18
TrEMBLA0A2P5D7J01e-130A0A2P5D7J0_PARAD; NAC domain containing protein
STRINGXP_010107555.11e-112(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24162981
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-77NAC domain containing protein 25