PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025960.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 283aa    MW: 30905.1 Da    PI: 9.9462
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025960.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.81.9e-08179219954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  HL.SW.v1.0.G025960.1 179 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 219
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-14171233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-14176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-6180219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.05E-6193224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDVDMMMKSS SSSVGDHHHH QNHNHLDMIS IMMQMEKTSP EYCGSSPTFL DMNFSEGTNS  60
PPPPPPSVYP STTTAGISFL GGGGGNQIQE PVTPPPYQQQ PNAPLSGGAG GRLFKSDNIV  120
NNAIAVAANP YEKRNSMAAM REMIFRIAAM QPIHIDPESI KPPKRRNVKI SKDPQSVAAR  180
HRRERISERI RILQRLVPGG TKMDTASMLD EAIHYVKFLK KQVQTLEQVG QANNTRSSSA  240
SSSVAAVGFP GTHLGNLNYS AFFKACQPFN SSMPDQSLRM LR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093634.17e-80transcription factor HEC2
TrEMBLA0A2P5B2J91e-120A0A2P5B2J9_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010093634.13e-79(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-42bHLH family protein