PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G025944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 11326.1 Da PI: 9.4256 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.9 | 1.2e-36 | 18 | 105 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r +a+ sl+yeA ar+rdPvyG+v++i++lq+q+ HL.SW.v1.0.G025944.1 18 PCGACKFLRRKCVKGCIFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPPHKRVEAVFSLCYEALARIRDPVYGCVSHIFTLQHQV 105 7***********************9989*********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.083 | 17 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-36 | 18 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MNSNGGSGGG SGGSGGGPCG ACKFLRRKCV KGCIFAPYFD SEQGTAHFAA VHKVFGASNA 60 SKLLLRIPPH KRVEAVFSLC YEALARIRDP VYGCVSHIFT LQHQVIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-37 | 15 | 105 | 8 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-37 | 15 | 105 | 8 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024019012.1 | 4e-60 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-49 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | W9QZX5 | 2e-58 | W9QZX5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010092842.1 | 3e-59 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-51 | LOB domain-containing protein 19 |