PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025900.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 750aa    MW: 83132.9 Da    PI: 5.9768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025900.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-055796161355
                           HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                           R+ i +++ eLrel+P+ a      K s  + Le++++++ +Lq
  HL.SW.v1.0.G025900.1 579 RQLIQDRIKELRELIPSgA------KCSIDSLLERTIKHMLYLQ 616
                           77899************77......777778************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-385166IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.372566615IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-4579623IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MGTDLQQILR SLCFNSEWKY AVFWKLKHRA RMVLTWEDAY YDKSEQHSPA ENKCSNKKLE  60
KLHDGLYSHD PLGSAVAKMS YHVYSLGEGI VGQVAVSGKH QWIFADKHEM STCSTFEFSD  120
GWQNPFFAGI KTIAVVAVAP LGVVQLGSLN KVVEDMKMIA HIRDVFMALQ DSSMGCIPSL  180
IPSSMNSSLD LQDIPSKGFA PEAISDCLHN LDKALNEERP DVWFSIFPYL GKDNDSSYVW  240
SLPDNQQEKT ADIVINRGGL ELPTSGADEN AKLAQSEANI INLENHKVIG TNMHDKWKGG  300
KEISCKVPAV DSVNNVNPLS RESIVRDVNV CNIVPAENVE VDSVHFSSVP IDSAICDRVR  360
LDNVDYYQNG VLHVSEPSDI KFQKDLENLE FLTESSHMDT STTSLKFPAG YELHEALGPS  420
FLKKSKYFDW ESTKSEGKIP EMPGQTSCSQ LTSDFHPEHL LEAVVASVCQ SHSDVKSEKS  480
FCKSVQSLLT TENYPEPSSH TTLVTDSSNH SIGPTSLIGE DTPQCLSSSG VCGAMSPKGF  540
SSNCPSACSD QLERSSVPSK NNKKRARPGE NCRPRPRDRQ LIQDRIKELR ELIPSGAKCS  600
IDSLLERTIK HMLYLQSVAK HADKLNKYTD GKSSHKETSM LESSNYERGS SWAVEVGGNL  660
KVCSIIVENL NKNGQMVVEM MCEECSHFLE IAEAIKSLGL TILKGVTEAH GDKTWICFVV  720
EGQSNRSLHR MDILWSLVQI LQPKNATQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111900.10.0transcription factor bHLH155 isoform X1
TrEMBLA0A2P5FBC10.0A0A2P5FBC1_TREOI; MYC/MYB transcription factor
STRINGXP_010111900.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7