PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 373aa    MW: 41142.8 Da    PI: 6.0705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025850.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.72.4e-14182228354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  HL.SW.v1.0.G025850.1 182 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 228
                           79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-12182228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-14183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14183235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-5192231No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMSYGMKEDE AECSQTIQNN IQGFQDQFLL HQHQQIMHHH HQQDHQISSD HHIYNGGGRS  60
ALLFPEVSPI LQPTAWSLPP VHAYNPSHFG SNPVRDHDPF LAPPPPSSSY ANFMNRRGGG  120
APSLQFTYDG SHHHPSSDHL RILSDTIGPV VQPGSAPFGL QAELGKMTAQ EIMDAKALAA  180
SKSHSEAERR RRERINNHLA KLRSLLPSTT KTDKASLLAE VIQHVKELKR QTSLIAETSP  240
VPTETDELTV DDASSDEDGR FIIKASLCCE DRSDLLPDLI KTLKALRLRT LKAEITTLGG  300
RVKNVLFITG DEDSGAGADD EDDDDEDQPT HQYCISSIQE ALKAVIEKKA SEDSSSGSVK  360
RQRTTNNINI YP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010093397.11e-177transcription factor bHLH30
RefseqXP_024019422.11e-177transcription factor bHLH30
RefseqXP_024019423.11e-177transcription factor bHLH30
SwissprotQ9S7Y11e-109BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A2P5DQ220.0A0A2P5DQ22_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010093397.11e-177(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45893458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]