PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G025688.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | WRKY | ||||||||
Protein Properties | Length: 621aa MW: 66884.1 Da PI: 7.0918 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94 | 1.1e-29 | 361 | 419 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+H h+ HL.SW.v1.0.G025688.1 361 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHIHP 419 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-32 | 345 | 421 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.01E-26 | 353 | 421 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.598 | 355 | 421 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-35 | 360 | 420 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-25 | 362 | 419 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MEKGWGLTLD SDSHGFFLNK PQQLPVIDHT SSKRNIFGNS TDSPRTMTMF SGVDLSAVRF 60 SRREDQISVA MPPPPSDENR ASAAVVDFFS EKNRIVNDSD DSKAVAAVSV KKESSHGEAT 120 PGPSNLNTGL HLLTANTGSD QSTVDDGVSS DVEDKLSKNK VARLQVELQS MNAENQKLKE 180 MLTQVSSNYS ALQMHVVALM QQQQQQQQLN HRADTAQLLQ HQINNKDQEV KHERQFLDLG 240 PSAATVETVD DQVSNNSSSS EERTRSATPQ NNNIVQDVKY NNSTTSKDIT PFDHQDHSSA 300 SYRDCKRVNR EESPESESQG WAANKAVKLN PASKPIEQSP DATMRKARVS VRARSEAPMI 360 TDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRTILIT TYEGNHIHPL 420 PPAAMAMAST TTAAANMLLS GSMSSADGLM NPNLLARAIL PCSSNMATIS ASAPFPTVTL 480 DLTNNSNPLQ LLRSQPTQFQ VPLGQPQNFA TPHNAFGQSL YNQSKFSGLQ LSGQDMATVS 540 SAAQLHAHQT HPQASLADSV SAATAAITAD PNFTAALAAA ISSIIGNGAN QNNNNAASSA 600 ANPSSNSNNS NKMISSFPGN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 347 | 423 | 1 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010099182.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-150 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A2P5F0F9 | 0.0 | A0A2P5F0F9_TREOI; WRKY domain containing protein | ||||
STRING | XP_010099182.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF866 | 34 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-130 | WRKY family protein |