PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025496.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

YABBY

Protein Properties

Length: 102aa MW: 11188.9 Da PI: 10.3314

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025496.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	49	2.4e-15	2	101	23	134
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevpr 111 v++P++ + +vtv+CGhC++l ++ + + + +++ + + n+ ++ s+s+s s++ +++ + +pr HL.SW.v1.0.G025496.1 2 QVALPYKRFLDTVTVKCGHCSNLSFLTTRPTPIQAQFLDQFP------------LSLPGFCNNDFRKGSSSSSSCSST-TTSGEPMSPR 77 6899****************97766555544444444433............233333333333333333333322.3334445566 PP YABBY 112 vpp.virPPekrqrvPsaynrfik 134 p v++PPek+ r Psaynrf+k HL.SW.v1.0.G025496.1 78 GAPfVVKPPEKKHRLPSAYNRFMK 101 55559***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.5E-18	2	101	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MQVALPYKRF LDTVTVKCGH CSNLSFLTTR PTPIQAQFLD QFPLSLPGFC NNDFRKGSSS 60 SSSCSSTTTS GEPMSPRGAP FVVKPPEKKH RLPSAYNRFM K*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269\|PubMed:10225997, ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:10535738, ECO:0000269\|PubMed:11714690, ECO:0000269\|PubMed:15598802, ECO:0000269\|Ref.10}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269\|PubMed:10225998, ECO:0000269\|PubMed:15598802}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018852421.1	2e-35	PREDICTED: protein CRABS CLAW isoform X3
Swissprot	Q8L925	2e-23	CRC_ARATH; Protein CRABS CLAW
TrEMBL	A0A2P5E2G7	4e-36	A0A2P5E2G7_PARAD; YABBY protein
TrEMBL	A0A2P5FHG0	4e-36	A0A2P5FHG0_TREOI; YABBY protein
STRING	XP_010046616.1	2e-34	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10259	30	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	2e-24	YABBY family protein

Publications ? help Back to Top
Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development. Ann. Bot., 2014. 114(7): p. 1535-44 [PMID:24989787] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776] Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation. Nat Commun, 2017. 8(1): p. 1125 [PMID:29066759] Yamaguchi N, et al. Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. Nat Commun, 2018. 9(1): p. 5290 [PMID:30538233]