PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025450.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 417aa    MW: 47598.3 Da    PI: 6.1084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025450.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091426123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          +kC+ C +sFs+   L  H+r+H
  HL.SW.v1.0.G025450.1  4 HKCKLCFRSFSNGRALGGHMRSH 26
                          79********************9 PP
2zf-C2H212.40.00047277299123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ykC+ C+k+F++   L  H  +H
  HL.SW.v1.0.G025450.1 277 YKCETCKKVFRSYQALGGHRASH 299
                           9***********99999998887 PP
3zf-C2H211.70.00078332354123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp C ++Fs+   L  H r+H
  HL.SW.v1.0.G025450.1 332 HQCPVCFRVFSSGQALGGHKRSH 354
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.29E-5330No hitNo description
SMARTSM003550.065426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492431IPR007087Zinc finger, C2H2
PfamPF139126.2E-6427IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM003550.026277299IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-11277301IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.118277304IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-8277299No hitNo description
PROSITE patternPS000280279299IPR007087Zinc finger, C2H2
SuperFamilySSF576675.87E-8327354No hitNo description
PfamPF139121.3E-10331354IPR007087Zinc finger, C2H2
PROSITE profilePS501579.162332354IPR007087Zinc finger, C2H2
SMARTSM003550.096332354IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280334354IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEKHKCKLCF RSFSNGRALG GHMRSHMLNL PIPPKLEEEE QQPRQPPSPP ELSNSAESAS  60
SASSSDDDEG EEEIEERELV DEKGVYYGLR ENPKRSIRLV DPEFSFPVVD AGSVVLQDRE  120
SETESSKNPT RRRSKRTRKS GVFERHHHHH HRLHQEQQQY HKIDHQHHHH QDQEENDSFK  180
KIKLSKLSNK TDSWAEPEPV SSISDATTEE DVAFCLMMLS RDKWKRQENQ QRRVIDEDEE  240
EEEEEEEEER SIEESDQSEE LKSTRTNINV SRTRGKYKCE TCKKVFRSYQ ALGGHRASHK  300
KIKVSNVATA LDEPEENAAT TTTASMPEKK VHQCPVCFRV FSSGQALGGH KRSHVTGSYT  360
ITTTTTTTQT QTNKSSKKVV ESLIDLNLPA PVDEDEVSQI EHSAVSDGEF VNPIRH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1938833e-47KJ193883.1 Corylus avellana microsatellite BR245 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278670.11e-142PREDICTED: zinc finger protein ZAT4
TrEMBLF6GV561e-140F6GV56_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02720.t011e-141(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-52C2H2-like zinc finger protein