PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025358.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 209aa    MW: 22839.1 Da    PI: 7.3634
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025358.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.74.3e-292100194
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C ++Cvl+ ++     p++q +++ +++k+FG+s ++++++a+p+++r+++++sl++eA+ r+ +Pv+Gavg++++++
  HL.SW.v1.0.G025358.1   2 SCNGCRVLRKGCGESCVLRSCLhwiesPEAQGNATLFLAKFFGRSDLMSFISAVPDHHRPALFQSLLFEACGRTVNPVNGAVGLLSSGN 90 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkael 94 
                           ++++q+++e+
  HL.SW.v1.0.G025358.1  91 WHVCQAAVET 100
                           ******9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6071107IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MSCNGCRVLR KGCGESCVLR SCLHWIESPE AQGNATLFLA KFFGRSDLMS FISAVPDHHR  60
PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQAAVET ILCGGVLRPM QGGLLMQKLD  120
ESSDMLAVAG DTSSWPSSAY RYFPSLPSIY DPRQEQYYSG ARGSSSIFPM TEKLVWRDSI  180
SRSSEESVMT KSFGIGDHKE QKLLNLFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010092590.14e-87LOB domain-containing protein 39
SwissprotQ9SN233e-61LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2P5EZY51e-112A0A2P5EZY5_TREOI; Lateral organ boundaries domain containing protein
STRINGXP_010092590.11e-86(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-63LOB domain-containing protein 38