PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G025326.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 248aa MW: 28178.2 Da PI: 8.4094

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G025326.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.6	9.5e-18	164	245	11	97
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++ ++lp +fae+h g+k++ t+ l+ ++W vk+ k++++++++kGW+ F an +++gD +vF++ +r+ + l+v+++ HL.SW.v1.0.G025326.1 164 NRRYYMRLPDSFAENHLGSKTQ--TIYLT-VGTKKWGVKV--LKCGSGFFFSKGWSAFLAANSIRTGDACVFEFLSREPAVLKVSII 245 5566799*******777666..67755.478***..*****************************99999998998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	11.335	1	81	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.06E-12	4	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.2E-11	5	81	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.3E-18	150	246	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-18	151	245	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.338	154	247	IPR003340	B3 DNA binding domain
SMART	SM01019	5.2E-6	155	246	IPR003340	B3 DNA binding domain
CDD	cd10017	2.08E-16	155	245	No hit	No description
Pfam	PF02362	4.3E-15	167	246	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MARALPDEFV ELYGDTLDRS AYIALPCGHT WKIGMVTEDN SVYLYEDWPK FMEHYQIIVG 60 QLLIFNYRGS SNFDVIIMNK NLLEIDYTPF PFHSDGKKND TAPVIDLASS EESDSDYKGK 120 SKINEETMND TLTNMKPKMR RHTKAKQPYS KNPAFKRIIG IEGNRRYYMR LPDSFAENHL 180 GSKTQTIYLT VGTKKWGVKV LKCGSGFFFS KGWSAFLAAN SIRTGDACVF EFLSREPAVL 240 KVSIIES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF98	34	369

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-17	B3 family protein