PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G025159.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Trihelix
Protein Properties Length: 306aa    MW: 34397.3 Da    PI: 5.7758
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G025159.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.62.4e-1629120187
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                           +W+++ + +Li+a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ +   ss++ +fd+
  HL.SW.v1.0.G025159.1  29 CWSEEATSTLIDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSSSNGALSSSWTFFDR 117
                           7****************************************99999****************************99989999******* PP

              trihelix  85 lea 87 
                           lea
  HL.SW.v1.0.G025159.1 118 LEA 120
                           985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.9E-2627121No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGDITESLTP PSTTPASSHS RPMPVREDCW SEEATSTLID AWGRRYLELN RGNLRQKDWQ  60
DVADAVNALH GHTKKTHRTD VQCKNRIDTI KKKYKVEKAR VSSSNGALSS SWTFFDRLEA  120
LIGSNQKKPS PSLSPSPPVA VPLHSSSSYR KNSSSATVAS SALVALPQKR PAPAPAPDEG  180
FFRRNYSAMA AAAAAAEAEE DEDDLENEEE VDEEEEEEVE KERYSDDESV DGEGIRSLAR  240
AIARFGEVYE KVEAEKLRQM IELEKKRMQF AKDLEVRRMR MFMDTQLQLE RIKRGKRSGS  300
NVYYH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030176.11e-131trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A2P5EP441e-137A0A2P5EP44_TREOI; Trihelix transcription factor (Fragment)
STRINGXP_010109877.11e-130(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-39sequence-specific DNA binding transcription factors