PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024741.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 351aa    MW: 39472 Da    PI: 6.2209
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024741.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.46.1e-23160221259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                           dDg++WrKYGqK++ ++++pr+Y+rCt++   gC+++k+v++ +++p ++  +tY g+H+++
  HL.SW.v1.0.G024741.1 160 DDGHAWRKYGQKVILNAKHPRNYFRCTHKfdqGCQATKQVQKIEDEPhQMYRTTYYGNHTCS 221
                           8***************************9999**********9988736899********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-24144222IPR003657WRKY domain
PROSITE profilePS5081118.142154218IPR003657WRKY domain
SuperFamilySSF1182905.49E-23155221IPR003657WRKY domain
SMARTSM007747.7E-36159222IPR003657WRKY domain
PfamPF031069.4E-24160220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVFDPLPEQN ALSSARRKVI HELVQGRDLA NQLHSLLSRS DQNDGVSAED LVSKIMDSFT  60
NTLFMLNTDN NSDQAAATAH GHGVGDNGDE ICDVDSRLQS STSRIDHSLC LEGRKSEDSQ  120
ESCRSTSVIS STTHLKDRRG SYKRRKTSHT MKRETSTLID DGHAWRKYGQ KVILNAKHPR  180
NYFRCTHKFD QGCQATKQVQ KIEDEPHQMY RTTYYGNHTC SSVSKLLAPE LILDCPSSPS  240
HGSSVLLSFN NADHNNNNFV SKQLLTHPFF SSVKQEFNDN NNYQTSSSDY NNNNIVSSDH  300
HDDNNRLTTA IDHRVQAAGL ESDDHHNDIH GDDEIGMDIF DDVLRSFQFE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22159220868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010098011.18e-89probable WRKY transcription factor 70
TrEMBLA0A2P5CHL31e-127A0A2P5CHL3_PARAD; WRKY domain containing protein
STRINGXP_010098011.13e-88(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-44WRKY DNA-binding protein 70