PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G024424.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24774 Da PI: 7.8322 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ ++++++a+p+++r+++++sl+yeA r+ +Pv+Gavg+++ ++ HL.SW.v1.0.G024424.1 2 SCNGCRVLRKGCSDNCMLRECLqwietPQAQAHATLFVAKFFGRAGLMSFISAVPQHQRPALFQSLLYEAVGRTVNPVNGAVGLLWMGN 90 6**************************************************************************************** PP DUF260 85 qqleqlkaelall 97 ++++q+++e++l+ HL.SW.v1.0.G024424.1 91 WHVCQAAVETVLR 103 *******998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.165 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDNCMLR ECLQWIETPQ AQAHATLFVA KFFGRAGLMS FISAVPQHQR 60 PALFQSLLYE AVGRTVNPVN GAVGLLWMGN WHVCQAAVET VLRGGVLGPL SESAHDNNNA 120 ASSDHPSVSR RLWPKKRPSS STTTATFDES IHDHDRHAAD PYVLSPSDLD LCLMAAGTKM 180 VEKRRAVTPT SEEESETTTL NSSSVDSSTF LGDGGSHKRS KLLRLFM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007199277.1 | 1e-79 | LOB domain-containing protein 38 | ||||
Refseq | XP_021832795.1 | 1e-79 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9FN11 | 2e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2P5DNE7 | 1e-102 | A0A2P5DNE7_PARAD; Lateral organ boundaries domain containing protein | ||||
STRING | EMJ00476 | 5e-79 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 5e-69 | LOB domain-containing protein 39 |
Publications ? help Back to Top | |||
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