PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G024418.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 261aa MW: 28631.7 Da PI: 8.6321 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 111 | 8.5e-35 | 20 | 112 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqle 88 aCaaCk++r+kC ++C+lapyfpae++++f++vhk+FG+snv+k++k++ +e+r++a++slv+eA++r++dPv G ++ ++k+ +l+ HL.SW.v1.0.G024418.1 20 ACAACKHQRKKCHEGCILAPYFPAERSREFQAVHKVFGVSNVTKMVKNVvTDEDRRKAVDSLVWEACCRQKDPVLGPYAEYRKVYDELK 108 7***********************************************966777*****************************999998 PP DUF260 89 qlka 92 k+ HL.SW.v1.0.G024418.1 109 IYKS 112 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.593 | 19 | 121 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.3E-33 | 20 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MQRNVTTTTS AGATAAAQPA CAACKHQRKK CHEGCILAPY FPAERSREFQ AVHKVFGVSN 60 VTKMVKNVVT DEDRRKAVDS LVWEACCRQK DPVLGPYAEY RKVYDELKIY KSHEINQRTT 120 ASAYKSLSGL VGWNSTSSGV STNGNNNING QNGMVNGIVN SSNSLSYNFH DNGNVIVDQS 180 PFSCYSSSNY GQSNPEKIRQ LEKNTSTTTA TTVDSVVPVV LQQHQQQYSI GGFNQQYYLS 240 GQFNQVNTKT IESTIWEGGS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-21 | 7 | 95 | 4 | 85 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-21 | 7 | 95 | 4 | 85 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023380.1 | 1e-113 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 1e-44 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | A0A2P5E7R6 | 1e-135 | A0A2P5E7R6_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_008377048.1 | 3e-74 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12722 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-40 | LOB domain-containing protein 2 |