PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G024064.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family bHLH
Protein Properties Length: 496aa    MW: 55474.8 Da    PI: 4.9677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G024064.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.64.1e-12269344354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksL 54 
                           ++h + Er RR ++ ++++ L++l+P+++                          +++K++ a+i+  A+eYI++L
  HL.SW.v1.0.G024064.1 269 TKHFASERHRRVQMSDKYQLLKSLVPNPTkvisiesylsfsyllcfynhnlclLWHGEKNDRASIVGDAIEYIREL 344
                           78*************************999***********************99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.7E-11265364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-13266294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.659266344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-7269348No hitNo description
PfamPF000101.7E-9269344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-6272350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-13322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MYVDDGSCSF DPNDTAEATA GGSEDGFNSQ MPPLLPSMNG FSAAEELAYH QQQHQHLPHS  60
QEEVAIDMGL QQQLAFSMEN SYNIDINSTS QLVSFDHLQQ QQEQPQWDNQ DMAHNNIHRH  120
QLQEPADLLN LFHLPRCSAS SSSSITFANP TPKTDNFPST SLAFLGDVPM GMDSSSSSSV  180
PYDPLLHLNL PPQPPLFKDL FQSLPDGYAF PSAASRNGSL VSNGAMDMDG EGSGGVYQDG  240
PEGMQFENGV LEFARDRACI DKGRDGRGTK HFASERHRRV QMSDKYQLLK SLVPNPTKVI  300
SIESYLSFSY LLCFYNHNLC LLWHGEKNDR ASIVGDAIEY IRELRRTVNE LKILVEKKRR  360
GIEANKRQKS EEDTAGEVEN CNVKPDPDQS YIRSSWLQRK SKDTEVDVRI IDDEVTIKFV  420
QRKKINLLLT ASRVLDELQL DLRHVAGGHV GDTYSFLFNT KIYDGSSLYA SAIANKLIDI  480
LDRQFTVIVP PTTSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097712.11e-170transcription factor bHLH91
TrEMBLA0A2P5C6N50.0A0A2P5C6N5_PARAD; Basic helix-loop-helix transcription factor
STRINGXP_010097712.11e-169(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-63bHLH family protein