PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G024064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | bHLH | ||||||||
Protein Properties | Length: 496aa MW: 55474.8 Da PI: 4.9677 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4.1e-12 | 269 | 344 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...........................TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas........................kapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++ ++++ L++l+P+++ +++K++ a+i+ A+eYI++L HL.SW.v1.0.G024064.1 269 TKHFASERHRRVQMSDKYQLLKSLVPNPTkvisiesylsfsyllcfynhnlclLWHGEKNDRASIVGDAIEYIREL 344 78*************************999***********************99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.7E-11 | 265 | 364 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-13 | 266 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.659 | 266 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.43E-7 | 269 | 348 | No hit | No description |
Pfam | PF00010 | 1.7E-9 | 269 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-6 | 272 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.85E-13 | 322 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MYVDDGSCSF DPNDTAEATA GGSEDGFNSQ MPPLLPSMNG FSAAEELAYH QQQHQHLPHS 60 QEEVAIDMGL QQQLAFSMEN SYNIDINSTS QLVSFDHLQQ QQEQPQWDNQ DMAHNNIHRH 120 QLQEPADLLN LFHLPRCSAS SSSSITFANP TPKTDNFPST SLAFLGDVPM GMDSSSSSSV 180 PYDPLLHLNL PPQPPLFKDL FQSLPDGYAF PSAASRNGSL VSNGAMDMDG EGSGGVYQDG 240 PEGMQFENGV LEFARDRACI DKGRDGRGTK HFASERHRRV QMSDKYQLLK SLVPNPTKVI 300 SIESYLSFSY LLCFYNHNLC LLWHGEKNDR ASIVGDAIEY IRELRRTVNE LKILVEKKRR 360 GIEANKRQKS EEDTAGEVEN CNVKPDPDQS YIRSSWLQRK SKDTEVDVRI IDDEVTIKFV 420 QRKKINLLLT ASRVLDELQL DLRHVAGGHV GDTYSFLFNT KIYDGSSLYA SAIANKLIDI 480 LDRQFTVIVP PTTSY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010097712.1 | 1e-170 | transcription factor bHLH91 | ||||
TrEMBL | A0A2P5C6N5 | 0.0 | A0A2P5C6N5_PARAD; Basic helix-loop-helix transcription factor | ||||
STRING | XP_010097712.1 | 1e-169 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 4e-63 | bHLH family protein |