PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G023604.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 368aa    MW: 41700.6 Da    PI: 4.96
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G023604.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.44.1e-30157215259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers +dp+++++tY+++H h 
  HL.SW.v1.0.G023604.1 157 SDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSPSDPEIFIVTYTSDHSHA 215
                           79*************************998***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31142217IPR003657WRKY domain
PROSITE profilePS5081132.076151217IPR003657WRKY domain
SuperFamilySSF1182903.92E-26152217IPR003657WRKY domain
SMARTSM007742.0E-35156216IPR003657WRKY domain
PfamPF031062.0E-25158214IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEDWDLLAVV RSGGNSNNIG YESPNMANNN ITNTHQTTSF FVGNPLSGQE NDDDNHGDHD  60
NHLSLFHSFP HLFETTTPFD ELEELYKPFY PVDLKPPIMN SHLPPSDLPT VQPKQEPPQK  120
NLTMVQTAKQ PAPPKYKKRK NQQKRVVKEV REDGLYSDKW AWRKYGQKPI KGSPYPRSYY  180
RCSSSKGCLA RKQVERSPSD PEIFIVTYTS DHSHAHPTRR NSLAGSTRSK FPVGTISNNN  240
NNLINTQLED NKSLLDCTDS DKQKIIMSSD NSTTINTSVH REEEDDVMFG HSNNEYLFPS  300
LEDLEKGLEE LDDEVQSANT TGSNPKSDQI FDYSGGFDLD YEFSDHDHNF MDAWFSDQYS  360
TTVTGAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-17147218878Probable WRKY transcription factor 4
2lex_A8e-17147218878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6474061e-159KJ647406.1 UNVERIFIED: Humulus lupulus clone HL1641 WRKY transcription factor-like gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112624.17e-93WRKY transcription factor 22
TrEMBLA0A2P5FIZ71e-159A0A2P5FIZ7_TREOI; WRKY domain containing protein
STRINGXP_010112624.13e-92(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.17e-32WRKY family protein