PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G023270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 195aa MW: 22241.3 Da PI: 10.5668 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.5e-18 | 59 | 113 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +kR+t++k+qle Le+ F++ ++ +++ +L++ lgL+ rq+ vW+qN+Ra+ k HL.SW.v1.0.G023270.1 59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLK 113 89***************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 106.9 | 1.5e-34 | 59 | 150 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k+r lsk q+++LE+sF+e kLep++K++l+r+Lgl+prq+avW+qn+RAR ktkq+E+ yeaLk+ +d++++e+++L+kev +L+ HL.SW.v1.0.G023270.1 59 KKRRTLSKSQLESLERSFQEGVKLEPDKKMKLSRDLGLEPRQIAVWYQNKRARLKTKQIERSYEALKHDFDRMSKEKQKLQKEVVKLKC 147 46677**********************************************************************************99 PP HD-ZIP_I/II 90 elk 92 +l+ HL.SW.v1.0.G023270.1 148 KLR 150 887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.04E-16 | 49 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.099 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 57 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 59 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.02E-12 | 59 | 116 | No hit | No description |
Pfam | PF00046 | 8.9E-16 | 59 | 113 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.7E-9 | 115 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDWNISNARR GVSRTGSSYG FPFHKDYDSH YQGMNRKPHQ LAILSETAQR LNVGPCMEKK 60 RRTLSKSQLE SLERSFQEGV KLEPDKKMKL SRDLGLEPRQ IAVWYQNKRA RLKTKQIERS 120 YEALKHDFDR MSKEKQKLQK EVVKLKCKLR DQNASGSKQV PMSGNSSMIS REDKAESTAD 180 AIISGSSNMS QGTN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015898574.1 | 1e-56 | putative homeobox-leucine zipper protein ATHB-51 isoform X1 | ||||
TrEMBL | A0A2P5FVQ0 | 3e-55 | A0A2P5FVQ0_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_008241330.1 | 2e-52 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 4e-27 | homeobox 51 |