PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | HL.SW.v1.0.G023027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
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Family | LBD | ||||||||
Protein Properties | Length: 267aa MW: 29854.9 Da PI: 6.7522 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.3 | 6.1e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C aCk+lrrkC ++C++apyf++eq +++fa++hk+FGasnv+kll++lp ++r+ a+ ++ yeA+ar++dP+yG+v++i++lqqq+ HL.SW.v1.0.G023027.1 7 PCGACKFLRRKCIRGCIFAPYFCHEQgASHFAAIHKVFGASNVSKLLTHLPVSDRPGAAVTISYEAQARLKDPIYGCVSHIFALQQQVI 95 7*************************89************************************************************* PP DUF260 89 qlkaelallkee 100 +l+a+la++ke+ HL.SW.v1.0.G023027.1 96 NLQAQLASIKEQ 107 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.678 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGASHFAAI HKVFGASNVS KLLTHLPVSD 60 RPGAAVTISY EAQARLKDPI YGCVSHIFAL QQQVINLQAQ LASIKEQAAQ NFGNSSGIGS 120 NENPNEKYIK DVQNWFQSET NMMMMMTTPQ FNPNMVTSET YNASHAMPYT ENKPAPLNSN 180 SGGSSSCENS MFGSEENNNN NDQFYNQNHN NSNNMGRFDE AYHYMSSLDS LQQAVNRQMD 240 FQDYSDDHHH HHHHHESVPF SYTRHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010111895.1 | 1e-107 | LOB domain-containing protein 29 | ||||
TrEMBL | A0A2P5FBD5 | 1e-120 | A0A2P5FBD5_TREOI; Lateral organ boundaries domain containing protein | ||||
STRING | XP_010111895.1 | 1e-107 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3571 | 33 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-66 | lateral organ boundaries-domain 29 |